SPNHC 2017 Biodiversity Informatics 101: Difference between revisions

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== General Information ==
'''When:''' Sunday, June 18, 2017
'''Where:''' [http://www.spnhc2017denver.org/ 2017 SPNHC Annual Meeting] in Denver, Colorado. The Curtis Hotel, Room: Red Rover
'''Online:''' [https://idigbio.adobeconnect.com/_a1130716096/biodiversityinformatics101 Adobe Connect https://idigbio.adobeconnect.com/biodiversityinformatics101]
'''Sponsored by:''' The Smithsonian, iDigBio, and SPNHC
'''Organizers''' Jennifer Strotman (Lead and Concept), Holly Little, Deborah Paul
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|Biodiversity Informatics 101 Biblio Entries
|Biodiversity Informatics 101 Biblio Entries
|-  
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|Biodiversity Informatics 101 Blog Post
|[https://www.idigbio.org/content/spnhc-2017-theme-next-generation-best-practices-perfect-fit-idigbio SPNHC 2017 iDigBio Events Blog Post]
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This wiki supports the '''SPNHC 2017 Biodiversity Informatics 101 Short Course''', Denver, Colorado, 18 June, 2017.
This wiki supports the '''SPNHC 2017 Biodiversity Informatics 101 Short Course''', Denver, Colorado, 18 June, 2017.


Three themes of this course:
The short course will provide an introduction to natural history biodiversity informatics. The course is designed for museum professionals that need a better understanding of the natural history informatics landscape or the resources available for digitizing and digitally sharing natural history collections data. Topics will cover the basics of natural history collection data and digital object lifecycle management, including digitally archiving and mobilizing collections data and participation in global initiatives. The course will be led by museum and informatics professionals with experience in natural history collections digitization and informatics.
 
Abstract.


=== Three themes of this course: ===
*All Sections include panel and open-discussion sessions for questions, generating new ideas, and developing professional networks. Those signing up may also be invited to share information and their specific expertise in a presentation.
**Theme 1: Data, Standards, and Resources. What is Natural History Biodiversity Informatics? Topics covered will include introductions to data standards, data sharing standards, specimen and collection object imaging, data mobilization, data and media management, data cleanup tools and methods, and best practices for these subjects.
** Theme 2:  Who's who in Natural History Biodiversity Informatics? We will provide overviews for many of the projects, initiatives, and organizations currently involved in mobilizing collections data, see many examples here. Find out how you and your collections benefit from these initiatives. Learn how you can contribute your expertise and experience to them.
**Theme 3:  Getting Involved. Resources for learning more about and participating in Natural History Biodiversity Informatics.  For example, find out how you might increase your biodiversity informatics skills and data literacy through a Data or Software Carpentry workshop. Investigate existing iDigBio and other community working groups. Get a SPNHC Demo Camp Preview. Learn how all this content helps you work with your collections’ informatics specialists. And, please come to help shape the 2018 SPNHC + TDWG joint meeting opportunities.


=== [https://docs.google.com/forms/d/e/1FAIpQLScI--K3aD8JSAsBvJR3ZDAdidPZpXlE0l4eWAv3_A6K_ig4Ig/viewform Participant Questionnaire] ===


==SPNHC 2017  Symposium - Specimens Full Circle - Agenda and Logistics==
==SPNHC 2017  Symposium - Biodiversity Informatics 101 - Agenda and Logistics==
*Agenda (see schedule below)
*Agenda (see schedule below)
*All Day Sunday 18 June, 2017. Start time: 9 am
*All Day Sunday 18 June, 2017. Start time: 8 am
*Remote participation: http://idigbio.adobeconnect.com/ (to be decided)
*Room: Red Rover, The Curtis Hotel
*Link to iDigBio - Calendar Announcement (which needs to be created)
*Link to iDigBio - [https://www.idigbio.org/content/spnhc-2017-idigbio-events SPNHC 2017 iDigBio Events Calendar Announcement]
*Twitter: @iDigBio #SPNHC2017 and conveners: @ @ @idbdeb
*Twitter handles @iDigBio @SPNHC2017 with '''hashtag''' #nhcbiodiv101 and organizers: @iamlilh @idbdeb


===General SPNHC 2017 Information===
===General SPNHC 2017 Information===
* SPNHC 2017 Program
* [http://www.dmns.org/media/3015470/dmnsreports6.pdf SPNHC 2017 Program]
* SPNHC at-a-glance meeting schedule
* [http://www.spnhc2017denver.org/media/1117/schedule-for-program.pdf SPNHC at-a-glance meeting schedule]
* [http://www.spnhc2017denver.org/ SPNHC 2017 Conference Web Site]
* [http://www.spnhc2017denver.org/ SPNHC 2017 Conference Web Site]


==Conference and Symposium Blog Post==
==Symposium / Short Course Resources==
Blog post
*[https://docs.google.com/forms/d/e/1FAIpQLScI--K3aD8JSAsBvJR3ZDAdidPZpXlE0l4eWAv3_A6K_ig4Ig/viewform Questionnaire]
*[https://drive.google.com/drive/folders/0B8VbchNufAs6TF9rWGNFdzlMU2c?usp=sharing Google Drive Link]
**[http://tinyurl.com/spnhcbi101notes Google Shared Notes] http://tinyurl.com/spnhcbi101notes
*Collection Management Software Test Drives...(also see [http://bit.ly/idigbiodb iDigBio comparison worksheet])
**Arctos - see Erica Krimmel for a live demo
***[https://arctosdb.org/learn/ Arctos website]
***[http://arctos.database.museum/ Search Arctos]
***[https://www.idigbio.org/tags/arctos iDigBio wiki content related to Arctos]
**eMu - see Holly Little for a live demo
***[http://alm.axiell.com/collections-management-solutions/technology/emu-collections-management/ EMu website]
***[https://www.idigbio.org/tags/emu iDigBio wiki content related to EMu]
**Specify - see Gary Motz for a live demo of Specify 6, 7, and Insight (iPad)
***[http://specifyx.specifysoftware.org/ Specify website]
***[https://www.idigbio.org/tags/specify iDigBio wiki content related to Specify]
**Symbiota - see Gary Motz for a live demo
***[http://symbiota.org/ Symbiota website]
***[http://hasbrouck.asu.edu/sandbox/index.php Symbiota Sandbox]
***[https://www.idigbio.org/tags/symbiota iDigBio wiki content related to Symbiota]
*Data Standards & Vocabularies
**DarwinCore (DwC) standard
***[http://rs.tdwg.org/dwc/terms/index.htm DwC terms]
***[https://github.com/tdwg/dwc-qa/blob/master/README.md DwC Q&A]
***[https://github.com/tdwg/dwc-qa/wiki/Webinars DwC Hour webinars]
*Darwin Core Hour
**Darwin Core Hour Presentation at NHCBI 101: [https://docs.google.com/presentation/d/1Bj23MC6FY36uVORBWXY_rHUhK6uX_i2-li21P8fIxjw/edit?usp=sharing Making DwC Stick: Introducing the Darwin Core Hour Webinar Series and Git Hub]
**[https://tinyurl.com/zja2muz Darwin Core Hour Input Form]
**[https://github.com/tdwg/dwc-qa Darwin Core Questions and Answers (on GitHub)]
**[https://youtu.be/saNUtQijRYM Paula's YouTube video explaining how to use the DwC Q&A GitHub]
**[https://github.com/tdwg/dwc-qa/wiki/Webinars DwC Hour Webinar Schedule and Recordings]
*[https://docs.google.com/spreadsheets/d/1PBSRsoEUo8IuAwQnkp8GXJN50dbCJ_aeYajZy9bv-FM/edit?usp=sharing Post-Its and Minute Cards - morning]
*Participant List
*[https://www.idigbio.org/content/spnhc-2017-theme-next-generation-best-practices-perfect-fit-idigbio Blog post]
*[http://openrefine.org/ Open Refine] - data cleaning application
*[http://wiki.datakurator.org/wiki/ Kurator] - toolkit of assorted workflows for cleaning data
*[https://github.com/DenverBotanicGardens/protoColl/ Denver Botanic Gardens Protocols] -repository of protocols


==Symposium Presentations Day 1==
==Short Course Outline==
'''Sunday, 18 June 2017'''
'''''AGENDA in development'''''<br/>
'''Sunday, 18 June 2017'''<br/>
'''Room: Red Rover'''
{| class="wikitable"
{| class="wikitable"
|+ SPNHC 2017 Biodiversity Informatics 101
|+ SPNHC 2017 Biodiversity Informatics 101
Line 42: Line 94:
!width="53%"|Title
!width="53%"|Title
!width="40%"|Presenter
!width="40%"|Presenter
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| first morning session
|-
|-
|1||9:00 - 9:10||Course Introduction: SPNHC 2017 Biodiversity Informatics 101<br/>Themes 1,2,3||Jennifer Strotman, Holly Little, Deb Paul
| 0 ||7:45 - 8:00||Sign-in, Name tags, Wifi for SPNHC 2017 Biodiversity Informatics 101||
|-
| 1 ||8:00 - 8:15||Course Introduction: SPNHC 2017 Biodiversity Informatics 101 [https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/01_Paul_Debbie_2017-06-18_INTRO_SPNHCbiodiv101dp.pptx Slides]<br/>Themes 1,2,3||Holly Little, Deborah Paul, Jennifer Strotman
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 1: Collections Data, Standards, and Resources. What is Natural History Biodiversity Informatics?
|-  
|-  
|2||9:10 - 9:30||Theme 1a||speaker/s
| 2 ||8:15 - 8:30||Encouraging the Proliferation of Digital Data<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/02-Nelson-SPNHC_2017_wrkshp.pptx Slides]||Gil Nelson
|-
|-
|3||9:30 - 9:50||Theme 1b||speaker/s
| 3 ||8:30 - 8:45||Collection Management Systems: Laying the Groundwork for Biodiversity Informatics<br/>[https://drive.google.com/open?id=1qUMxcEaKBWKR4oRwzs-1cWl-rCHHP--WJqoKYk47yI0 Google Slides]||Erica Krimmel, Gary Motz
|-
|-
|4||9:50 - 10:10||Theme 1c||speaker/s
| 4 ||8:45 - 8:55||Collections Imaging and Resources<br/>[https://drive.google.com/open?id=1Cll-cVUkg4tuMcM7GgF30kNgqFOl4yHXlSAovJIzyQE Google Slides]|| Holly Little, Laurence Livermore
|-
|-
|||10:10 - 10:30 || BREAK
| 5 ||8:55 - 9:10||Digital Curation - DAMS, Digital Preservation, Digital Lifecycle Management<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/05_Snyder_R_2017_SPNHC.pptx Slides]||Rebecca Snyder
|-
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| second morning session
| 6 ||9:10 - 9:30||Panel and Open Discussion Q & A|| All presenters and participants
|-
|-
| 5 || 10:30 - 10:50 ||Theme 1d||speaker/s
| ||9:30 - 10:00 || BREAK
|-
|-
| 6|| 10:50-11:10 ||Theme 1e||speaker/s
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 1: continued
|-
|-
| 7|| 11:10-11:30 ||Theme 2a||speaker/s
| 7 || 10:00 - 10:05 || Framing the Conversation for Theme 1: part II
|-
|-
| 8 || 11:30-11:50 ||Theme 2b||speaker/s
| 8 || 10:05 - 10:25 ||Standards and Data Mobilization<br/>Once the data is out, then what? Feedback, Action, Data Use/Citation/Tracking <br/>[https://drive.google.com/open?id=1nljyst0C9xHwGoQ1Df69i1iXMkovCsEIn-gZa4C9SwU Google Slides]||Holly Little, Laurence Livermore
|-
|-
| || 11:50-12:00 || Open Discussion Session
| 9 || 10:25 - 10:40 ||Data Enhancement / Curation: Field to Database<br/>[https://drive.google.com/open?id=1PuO0XBoJEzMUmy30O6pz4qzezvYFQZw89EwVg_xXZKE Google Slides] || Rick Levy
|-
|-
| || 12:00 - 1:30 || LUNCH
| 10 || 10:40 - 10:55 ||Data Enhancement / Curation: Georeferencing<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/10_Cmaier_IDigBio_Georef.pptx Slides]|| Crystal Maier
|-
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| first afternoon session, ballroom b
| 11 || 10:55 - 11:10 ||Data Enhancement / Curation: Focus on Transcription Centers<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/11_Livermore_2017.06.13%20Transcription%20Platforms.pptx Slides] ||Laurence Livermore
|-
|-
| 9 || 1:30-1:50 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/130_Dame_SPNHC_2015.pdf The contribution of small collections: A case study for Fuireneae (Cyperaceae) (pdf)] ||'''Heather Dame''' and Anna Monfils (Central Michigan University)
| 12 || 11:10 - 11:30 ||Data Enhancement / Curation: Data Cleaning, Automation / Scripting / APIs, Open Refine, Kurator<br/>[http://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/12_Wieczorek_SPNHC2017_BI101_DataQuality.pptx.pptx Slides]|| John Wieczorek
|-
|-
| 10 || 1:50-2:10 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/150_Guala_SPNHC2015.pdf Biodiversity Information Serving Our Nation (Bison), The Integrated Taxonomic Information System (ITIS) and the Federal Ecosystem of Biodiversity Data (pdf)]||'''Gerald F. Guala'''
| 13 || 11:30 - 12:00 || Panel and Open Discussion Q & A; Lunch Homework|| All presenters and participants
|-
|-
| 11 || 2:10-2:30 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/210_Woller.pdf The scrub-lovin' grasshoppers (Orthoptera: Acrididae: Melanoplus: The Puer Group) of the southeastern U.S.: integrating specimen data from then and now for maximum effect (pdf)]|| '''Derek Woller''' and Hojun Song (Texas A & M)
| || 12:00 - 1:00 || LUNCH
|-
|-
| 12 || 2:30-2:50 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/230-Anderson-EPA_SPNHC.pdf Something Old, Something New, Specimens Borrowed And Published Too: Integrating New Specimens And Old Collections Into Research (pdf)]<br/>Note this talk renders fine if you download it. For some reason, it does not render accurately in a browser.||'''Evan Anderson''' (Department of Geological Sciences, University of Colorado Boulder), Dena M. Smith (CU Museum of Natural History, University of Colorado)
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 2: Who's who or Who's that? in Natural History Biodiversity Informatics? Making Connections
|-
|-
| 13 || 2:50 - 3:10 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/EClites_SPNHC_2015_05_20.pdf Collaborating With Federal Partners: A New Online National Park Service Locality Database Through the University of California Museum of Paleontology (pdf)]||'''Erica C. Clites''', et al.
| 14 || 1:00 - 1:15 ||Joining Paleontological and Neontological biodiversity data<br/>PBDB, ePANDDA - Making Connections - No Silos<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/ePANDDA_BerkeleyWrkshp_Gil.pptx Slides]||Gil Nelson, Talia Karim
|-
|-
|||3:10 - 3:30 || BREAK
| 15 || 1:15 - 1:25 ||Alphabet Soup & Advocacy<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/14_Paul_and_James_AlphabetSoup_SPNHC2017_BI101.pptx Slides]||Deborah Paul, Shelley James
|-
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| second afternoon session, ballroom b
| 16 || 1:25 - 1:40 ||Focus on Entomological biodiversity data and collections<br/>ECN, EntSoc, InvertNet, ECN liaison with SPNHC<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/16_Young%20%26%20Brabant%20iDigBio%20Denver%202017.pptx Slides]||Dan Young, Craig Brabant
|-
|-
| 14 || 3:30-3:50 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/330_Franz.pdf Taxonomic concept resolution for voucher-based biodiversity information platforms (pdf)]|| '''Nico Franz''' (Arizona State University), Bertram Ludaescher (University of California, Davis), Edward Gilbert (Arizona State University), Alan Weakley (University of North Carolina, Chapel Hill)
| 17 || 1:40 - 1:55 ||View from the EU:<br/>SYNTHESYS3, CETAF, NatSCA, GCG, DiSSCo<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/17-Livermore-Haston-SPNHC%202017%20Europe%20b.pptx Slides]||Elspeth Haston, Laurence Livermore
|-
|-
| 15 || 3:50-4:10 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/350_Denslow_NFN_SPNHC2015.pdf An Update on the Notes From Nature Project: Bringing A Proof Of Concept Into Full Production (pdf)]||Robert Guralnick, '''Michael W. Denslow'''
| 18 || 1:55 - 2:05 ||What's up down-under?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/18-What_up_downunder_SAJ%2BNF.pptx Slides]||Shelley James, Nicole Fisher
|-
|-
| 16 || 4:10-4:30 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/410_Gilbert_OCR_2015-05-20.pdf Specimen label digitization using OCR/NLP tools integrated within the Symbiota processing toolkit (pdf)]||'''Ed Gilbert''', et al (Arizona State University)
| 19 || 2:05 - 2:15 ||Expanding NHC Stakeholders: CCBER - Ecology and Collections Together<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/19_SPNHC%20Wahlert%202017.ppt Slides]|| Gregory Wahlert
|-
|-
| 17 || 4:30-4:50 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/430_Lillywhite.pdf The Processes, End Uses and Unexpected Bonuses of High Resolution Imaging of Entomology Collection Items (pdf)]|| '''Peter Lillywhite'''
| 20 || 2:10 - 2:20 ||2-minute Stand Ups<br/>Jonathan Kennedy<br/>Megan Ryan King<br/>Laurence Livermore<br/>Matthew Yoder<br/>
|-
|-
| 18 || 4:50 - 5:10 ||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/450_Holroyd_SPNHC_2015.pdf Mobilizing Fossils for Global Change Research (pdf)]||'''P. A. Holroyd''' & C. R. Marshall
| 21 || 2:20 - 2:30 ||Open TBD
|-
|-
| || 5:10 - 5:30 || Open Discussion Session || ||
| 22 || 2:30 - 3:00 || Panel and Open Discussion Q & A || All presenters and participants
|-
|-
|}
| ||3:00 - 3:30 || BREAK
 
==Symposium Presentations Day 2==
'''Thursday, 21 May 2015'''
{| class="wikitable"
|+ Specimens Full Circle, Day 2
!width="2%"|
!width="10%"|Time
!width="53%"|Title
!width="40%"|Presenter
|-
|1||8:50||[http://figshare.com/articles/A_picture_is_worth_a_thousand_words_imaging_in_digitisation_workflows/1439728 A picture is worth a thousand words: imaging in digitisation workflows (Figshare)]||'''Vladimir Blagoderov''' and Laurence Livermore (Natural History Museum, London)
|-
|-
|2||9:10||[http://figshare.com/articles/Inselect_an_innovative_tool_for_automating_digitisation_of_natural_history_collections/1422137 Inselect: an innovative tool for automating digitisation of natural history collections. (Figshare)]|| '''Laurence Livermore''' (Natural History Museum, London)
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 3: Getting Involved: resources for learning more about and participating in Natural History Biodiversity Informatics
|-
|-
|3||9:30||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/Walker_SPNHC_2015.pdf Putting Our Images to Work: Using Digitized Fossil Beetles to Study a Global Climate Transition (pdf)]||'''Lindsay Walker''' (University of Colorado)
| 23 || 3:30 - 3:40 || Biodiversity Data Skills and Literacy: What, Where, and How?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/23_2017-06-17_SPNHCbiodiv101_biodivSkillsTalk.pptx Slides]|| Deborah Paul
|-
|-
|4||9:50||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/KarimWalkerSPNHC2015.pdf Integrating Imaging into Curatorial Workflows (pdf)]||'''Talia Karim''', Lindsay Walker (University of Colorado)
| 24 || 3:40 - 3:50 || Making DwC Stick: Introducing the Darwin Core Hour Webinar Series and Git Hub<br/>[https://drive.google.com/open?id=1Bj23MC6FY36uVORBWXY_rHUhK6uX_i2-li21P8fIxjw Google Slides]||Gary Motz on behalf of the Darwin Core Hour Team
|-
|-
| ||10:10 ||Break||
| 25 || 3:50 - 4:00 || Innovative Uses of Collections Data<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/25_James_SPNHCSunday.pptx Slides]|| Shelley James
|-
|-
|6||10:30||Joining up for digitisation – a pilot project between Kew and the Natural History Museum ||Kew - '''Alan Paton''', Sara Phillips, Elizabeth Woodger, et al. NHM - Sandy Knapp, Theresa Howard, Jonathan Gregson, Steve Cafferty, Jacek Wajer, Ben Atkinson
| 26 || 4:00 - 4:10 || DEMO Camp Preview, Working Groups, Get Involved || All - as a group
|-
|-
|7||10:50||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/Thursday_06_Gillespie_SPNHC_2015_Students&Digitization.pdf Inclusion of botany-naïve undergraduates in digitization workflows: it is possible! (pdf)]|| '''Emily Gillespie''' (Marshall University)
| 27 || 4:10 - 5:00 || TDWG - SPNHC 2018 Joint Meeting; Minute Cards; Panel and Open Discussion; Wrap up; Survey || All presenters and participants
|-
|-
|8||11:10||[http://figshare.com/articles/Digital_Collections_Programme_A_structured_approach_to_mass_digitisation/1422135 Digital Collections Programme: A structured approach to mass digitisation (Figshare)]||'''Ben Atkinson''' (Natural History Museum, London)
|-
|9||11:30||[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2015/specimens-full-circle/spnch-2015_PSMAYER-final.pdf Follow a Fossil Full Circle From Collection to Research to Outreach and Interpretation Through the Field Museum’s Silurian Reef Digitization Project (pdf)]||'''Paul Mayer''' (The Field Museum)
|-
|}
|}


==Symposium Recordings==
==Workshop Recordings==
*[http://idigbio.adobeconnect.com/p41qp22v25y/ Day1 first morning session, ballroom b]
*[http://idigbio.adobeconnect.com/p7xr9jznyi6/ Day1 second morning session, ballroom b]
*[http://idigbio.adobeconnect.com/p31xuaysq9x/ Day1 first afternoon session, ballroom b]
*[http://idigbio.adobeconnect.com/p6cor6lza8t/ Day1 second afternoon session, ballroom b]


*[http://idigbio.adobeconnect.com/p9q9r7nruuc/ Day2 first session]
*[http://idigbio.adobeconnect.com/pt8rbua1vyfp/ Theme 1]
*[http://idigbio.adobeconnect.com/p8yz5wkivqa/ Day2 second session]
*[http://idigbio.adobeconnect.com/p6ejdt6klccx/ Theme 1 Continued]
*[http://idigbio.adobeconnect.com/pnnilgp76bfj/ Theme 2]
*[http://idigbio.adobeconnect.com/pg1ygubwiux5/ Theme 3]


==[[Digitization Resources|Digitization Resources Wiki Home]]==
==[[Digitization Resources|Digitization Resources Wiki Home]]==

Latest revision as of 13:47, 22 May 2018

General Information

When: Sunday, June 18, 2017

Where: 2017 SPNHC Annual Meeting in Denver, Colorado. The Curtis Hotel, Room: Red Rover

Online: Adobe Connect https://idigbio.adobeconnect.com/biodiversityinformatics101

Sponsored by: The Smithsonian, iDigBio, and SPNHC

Organizers Jennifer Strotman (Lead and Concept), Holly Little, Deborah Paul

Quick Links for SPNHC 2017 Biodiversity Informatics 101
[[File:|center|200px|]]
Biodiversity Informatics 101 Schedule
Biodiversity Informatics 101 Biblio Entries
SPNHC 2017 iDigBio Events Blog Post

This wiki supports the SPNHC 2017 Biodiversity Informatics 101 Short Course, Denver, Colorado, 18 June, 2017.

The short course will provide an introduction to natural history biodiversity informatics. The course is designed for museum professionals that need a better understanding of the natural history informatics landscape or the resources available for digitizing and digitally sharing natural history collections data. Topics will cover the basics of natural history collection data and digital object lifecycle management, including digitally archiving and mobilizing collections data and participation in global initiatives. The course will be led by museum and informatics professionals with experience in natural history collections digitization and informatics.

Three themes of this course:

  • All Sections include panel and open-discussion sessions for questions, generating new ideas, and developing professional networks. Those signing up may also be invited to share information and their specific expertise in a presentation.
    • Theme 1: Data, Standards, and Resources. What is Natural History Biodiversity Informatics? Topics covered will include introductions to data standards, data sharing standards, specimen and collection object imaging, data mobilization, data and media management, data cleanup tools and methods, and best practices for these subjects.
    • Theme 2: Who's who in Natural History Biodiversity Informatics? We will provide overviews for many of the projects, initiatives, and organizations currently involved in mobilizing collections data, see many examples here. Find out how you and your collections benefit from these initiatives. Learn how you can contribute your expertise and experience to them.
    • Theme 3: Getting Involved. Resources for learning more about and participating in Natural History Biodiversity Informatics. For example, find out how you might increase your biodiversity informatics skills and data literacy through a Data or Software Carpentry workshop. Investigate existing iDigBio and other community working groups. Get a SPNHC Demo Camp Preview. Learn how all this content helps you work with your collections’ informatics specialists. And, please come to help shape the 2018 SPNHC + TDWG joint meeting opportunities.

Participant Questionnaire

SPNHC 2017 Symposium - Biodiversity Informatics 101 - Agenda and Logistics

  • Agenda (see schedule below)
  • All Day Sunday 18 June, 2017. Start time: 8 am
  • Room: Red Rover, The Curtis Hotel
  • Link to iDigBio - SPNHC 2017 iDigBio Events Calendar Announcement
  • Twitter handles @iDigBio @SPNHC2017 with hashtag #nhcbiodiv101 and organizers: @iamlilh @idbdeb

General SPNHC 2017 Information

Symposium / Short Course Resources

Short Course Outline

AGENDA in development
Sunday, 18 June 2017
Room: Red Rover

SPNHC 2017 Biodiversity Informatics 101
Time Title Presenter
0 7:45 - 8:00 Sign-in, Name tags, Wifi for SPNHC 2017 Biodiversity Informatics 101
1 8:00 - 8:15 Course Introduction: SPNHC 2017 Biodiversity Informatics 101 Slides
Themes 1,2,3		 Holly Little, Deborah Paul, Jennifer Strotman
Theme 1: Collections Data, Standards, and Resources. What is Natural History Biodiversity Informatics?
2 8:15 - 8:30 Encouraging the Proliferation of Digital Data
Slides		 Gil Nelson
3 8:30 - 8:45 Collection Management Systems: Laying the Groundwork for Biodiversity Informatics
Google Slides		 Erica Krimmel, Gary Motz
4 8:45 - 8:55 Collections Imaging and Resources
Google Slides		 Holly Little, Laurence Livermore
5 8:55 - 9:10 Digital Curation - DAMS, Digital Preservation, Digital Lifecycle Management
Slides		 Rebecca Snyder
6 9:10 - 9:30 Panel and Open Discussion Q & A All presenters and participants
9:30 - 10:00 BREAK
Theme 1: continued
7 10:00 - 10:05 Framing the Conversation for Theme 1: part II
8 10:05 - 10:25 Standards and Data Mobilization
Once the data is out, then what? Feedback, Action, Data Use/Citation/Tracking
Google Slides		 Holly Little, Laurence Livermore
9 10:25 - 10:40 Data Enhancement / Curation: Field to Database
Google Slides		 Rick Levy
10 10:40 - 10:55 Data Enhancement / Curation: Georeferencing
Slides		 Crystal Maier
11 10:55 - 11:10 Data Enhancement / Curation: Focus on Transcription Centers
Slides		 Laurence Livermore
12 11:10 - 11:30 Data Enhancement / Curation: Data Cleaning, Automation / Scripting / APIs, Open Refine, Kurator
Slides		 John Wieczorek
13 11:30 - 12:00 Panel and Open Discussion Q & A; Lunch Homework All presenters and participants
12:00 - 1:00 LUNCH
Theme 2: Who's who or Who's that? in Natural History Biodiversity Informatics? Making Connections
14 1:00 - 1:15 Joining Paleontological and Neontological biodiversity data
PBDB, ePANDDA - Making Connections - No Silos
Slides		 Gil Nelson, Talia Karim
15 1:15 - 1:25 Alphabet Soup & Advocacy
Slides		 Deborah Paul, Shelley James
16 1:25 - 1:40 Focus on Entomological biodiversity data and collections
ECN, EntSoc, InvertNet, ECN liaison with SPNHC
Slides		 Dan Young, Craig Brabant
17 1:40 - 1:55 View from the EU:
SYNTHESYS3, CETAF, NatSCA, GCG, DiSSCo
Slides		 Elspeth Haston, Laurence Livermore
18 1:55 - 2:05 What's up down-under?
Slides		 Shelley James, Nicole Fisher
19 2:05 - 2:15 Expanding NHC Stakeholders: CCBER - Ecology and Collections Together
Slides		 Gregory Wahlert
20 2:10 - 2:20 2-minute Stand Ups
Jonathan Kennedy
Megan Ryan King
Laurence Livermore
Matthew Yoder
21 2:20 - 2:30 Open TBD
22 2:30 - 3:00 Panel and Open Discussion Q & A All presenters and participants
3:00 - 3:30 BREAK
Theme 3: Getting Involved: resources for learning more about and participating in Natural History Biodiversity Informatics
23 3:30 - 3:40 Biodiversity Data Skills and Literacy: What, Where, and How?
Slides		 Deborah Paul
24 3:40 - 3:50 Making DwC Stick: Introducing the Darwin Core Hour Webinar Series and Git Hub
Google Slides		 Gary Motz on behalf of the Darwin Core Hour Team
25 3:50 - 4:00 Innovative Uses of Collections Data
Slides		 Shelley James
26 4:00 - 4:10 DEMO Camp Preview, Working Groups, Get Involved All - as a group
27 4:10 - 5:00 TDWG - SPNHC 2018 Joint Meeting; Minute Cards; Panel and Open Discussion; Wrap up; Survey All presenters and participants

Workshop Recordings

Digitization Resources Wiki Home

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