Biodiversity Digitization: Celebrating a decade of progress: Difference between revisions
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'''''Topic: Community ''''' | '''''Topic: Community ''''' | ||
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| 6:00 || [https://drive.google.com/file/d/1Is9OiJIdGLqP3PIAu5K0V67XHawvDB-a/view?usp=sharing '' | | 6:00 || [https://drive.google.com/file/d/1Is9OiJIdGLqP3PIAu5K0V67XHawvDB-a/view?usp=sharing ''Mobilizing the US Paleontological Collections Community''] | ||
'''Talia Karim''' (Invertebrate Paleontology, CU Museum of Natural History, University of Colorado) | '''Talia Karim''' (Invertebrate Paleontology, CU Museum of Natural History, University of Colorado) | ||
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Revision as of 18:47, 22 September 2021
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Social Media
Twitter: #biodigi2021, @idigbio
Announcement Page
Conference Registration
Registration is open!
Please register via Zoom: https://bit.ly/3zDMcQS
Event Overview
BioDigi2021 Event Overview PDF
Collaborative Notes
Feel free to use this document for notes
Conference Resources
- Virtual Meeting Resources
- iDigBio's Code of Conduct
- Update your Zoom client for the latest security enhancements Versions of the Zoom client older than 5.0 will be required to update before users can join webinars in the Digital Data conference!
Zoom Information
- Make sure you have upgraded your Zoom client.
- We suggest the desktop client or mobile app, which use less bandwidth than Zoom in your browser. See Zoom help for more: https://bit.ly/2RM0rzQ.
- We will be using the Zoom webinar platform. Only speakers' cameras and microphones will be enabled.
- Please use the Zoom Q&A feature if you have questions for the presenters. The chat function will only be used for discussion.
Kumospace
Visit Kumospace for an opportunity to view posters, interact with poster presenters, view the NMNH virtual collection tours, and socialize with colleagues and friends. Kumospace is similar to Zoom, but more casual and fun (there’s a Biodiversity Speakeasy).
The space will be open for the duration of the event.
Live Poster Session with Presenters: Tuesday, September 22 1:00 - 3:00pm EDT
Click Here to Join
Remote Poster Session
Pre-recorded poster presentations are available
for asynchronous viewing below.
prerecorded presentations
Live Poster Session in Kumospace:
Tuesday, September 22 1:00 - 3:00pm EDT
Poster room numbers indicated below.
Abstracts
Conference Agenda
DAY ONE: WEDNESDAY, 22 SEPTEMBER 2021
| Session One 8:30 - 11:00AM EDT | |
| 8:30 | Opening Gil Nelson (iDigBio) & Rebecca Johnson (NMNH) |
| 8:40 | Welcome Kirk Johnson (National Museum of Natural History, Smithsonian Institution) |
| Oral Presentations
Topic: Innovations: Strategy & Coordination | |
| 9:00 | Increasing the Reach and Impact of Scientific Collections through 3D-imaging
David Blackburn (iDigBio, Florida Museum of Natural History, University of Florida) |
| 9:20 | Progress in data mobilization: standards, coordination, and linking knowledge
Holly Little (Department of Paleobiology, National Museum of Natural History, Smithsonian Institution) |
| 9:30 | Creating the Building Blocks for Biodiversity Research
Diane Zorich (Digitization Program Office, Smithsonian Institution) |
| 9:40 | Translating digitization and data mobilization capacity into the geosciences and other disciplines
Gary Motz (Indiana Geological and Water Survey, Indiana University) |
| 9:50 | Session Q&A |
| 10:00 | Virtual NMNH Tour followed by Q&A
NMNH Botany Conveyor Tour
|
| 10:20 | Addressing key challenges in biodiversity data mobilization and use through the development of regional capacity.
Maheva Bagard Laursen (Global Biodiversity Information Facility - GBIF, Denmark) |
| 10:30 | Digitizing large insect collections - approaches and prioritization for sharing meaningful data and media
Torsten Dikow (Department of Entomology, National Museum of Natural History, Smithsonian Institution)" |
| 10:40 | user experience (UX) for citizen science
Mia Ridge (The British Library) |
| 10:50 | Session Q&A |
| Session Two 1:00 - 3:00 PM EDT | |
| Poster Session Topic: Digitization Spotlights Visit Kumospace for an opportunity to view posters, interact with poster presenters, and socialize with colleagues and friends. | |
| Session Three 6:00 - 8:00pm EDT | |
| Oral Presentations
Topic: Community | |
| 6:00 | Mobilizing the US Paleontological Collections Community
Talia Karim (Invertebrate Paleontology, CU Museum of Natural History, University of Colorado) |
| 6:20 | South African Natural Science Collections Data
Michelle Hamer (Natural Science Collections Facility, South African Biodiversity Institute, South Africa) |
| 6:30 | DigiVol: Crowdsourcing Collection Digitisation
Paul Flemons (Digital Collections and Citizen Science, Australian Museum) |
| 6:40 | WeDigBio—Next steps as the community blends a global data campaign, virtual science festival, and local outreach opportunities
Austin Mast (Department of Biological Science, Florida State University) |
| 6:50 | Session Q&A |
| 7:00 | Virtual NMNH Tour followed by Q&A
Digitizing Molluscs Through Space and Time
|
| 7:10 | We’re in this Together: Arctos Community and the Shared Data Ecosystem
Emily Braker (Vertebrate Zoology, CU Museum of Natural History, University of Colorado) |
| 7:20 | Automation helps accelerate data mobilization for small regional collections
Wei Song Hwang (Lee Kong Chian Natural History Museum, National University of Singapore) |
| 7:30 | International research (data) infrastructure frameworks as leverage for sustainable natural science collections funding:
The European example of the Distributed System of Scientific Collections
|
| 7:40 | Regional collaboration through GBIF: Latin America and the Caribbean
Anabela Plos (Global Biodiversity Information Facility - GBIF, Argentina) |
| 7:50 | Session Q&A |
DAY TWO: THURSDAY, 23 SEPTEMBER 2021
| Session Four 8:30 - 11:00AM EDT | |
| 8:30 | Global Collaboration for Improved Biodiversity Data
Joe Miller, Global Biodiversity Information Facility (GBIF) |
| Oral Presentations
Topic: Natural History Collections in Grand Challenges | |
| 8:50 | The grandest of challenges – why we need digitization, machine learning, and artificial intelligence in a time of global change Rebecca Johnson (National Museum of Natural History, Smithsonian Institution) |
| 9:10 | Connecting Natural History Collections and Genomics to Meet Grand Challenges
Pam Soltis (iDigBio, Florida Museum of Natural History, University of Florida) |
| 9:20 | How can archive collections support pandemic preparedness?
Yvonne-Marie Linton (Walter Reed Biosystematics, National Museum of Natural History, Smithsonian Institution) |
| 9:30 | Developments in valuing digital collections data
Helen Hardy (The Natural History Museum, London) |
| 9:40 | Session Q&A |
| 9:50 | Virtual NMNH Tour followed by Q&A
Digitization and Replication of Cultural Objects |
| 10:10 | Extended Digital Specimens on the Internet
Alex Hardisty (School of Computer Science and Informatics, Cardiff University, United Kingdom) |
| 10:20 | Bird’s Eye View of the Past 10 years of Collections Digitization in the U.S.
Barbara Thiers (New York Botanical Garden) |
| 10:30 | SpeciesLink's data cleaning strategies
Dora Canhos (CRIA - Centro de Referência em Informação Ambiental, Brazil) |
| 10:40 | Session Q&A |
| Session Five 1:00 - 3:30 PM EDT | |
| Oral Presentations
Topic: What’s Next | |
| 1:00 | The African Coordinating Mechanism for Biodiversity Information Management: Strengthening Science, Technology, and Innovation in Africa
Fatima Parker (South African National Biodiversity Institute) |
| 1:20 | Innovation with participation
Johannes Vogel (Museum für Naturkunde, Germany)" |
| 1:30 | New Drivers for Digitization at NMNH.
Carol Butler (Collections, National Museum of Natural History, Smithsonian Institution) |
| 1:40 | Bee management: Establishment of the first reference collection of West African bees
Drissa Coulibaly (Université Peleforo Gon Coulibaly (UPGC) de Korhogo., Ivory Coast) |
| 1:50 | Session Q&A |
| 2:00 | Virtual NMNH Tour followed by Q&A
Entomology
|
| 2:20 | Paleo, µCT, Deep Learning pipelines and research applications
Stewart Edie (Department of Paleobiology, National Museum of Natural History, Smithsonian Institution) |
| 2:30 | Automated use of digitized specimens in plant science
Pierre Bonnet (CIRAD, France) |
| 2:40 | Biological collections as research and development infrastructure
Scott Miller (Smithsonian Institution) |
| 2:50 | Hopping from NEON specimens and samples into a web of linked data
Paula Mabee (National Ecological Observatory Network - NEON) |
| 3:00 | The community has spoken. How now, can we translate words into action?
Reed Beaman (National Science Foundation) |
| 3:10 | Session Q&A |
| Session Six 6:00 - 8:00 PM EDT | |
| Panelist Discussion & Conference Wrap-up
Topic: Looking to the Future of Digitization | |
Posters
Visit Kumospace for an opportunity to view posters, interact with
poster presenters, and socialize with colleagues and friends.
Live Poster Session: Tuesday, September 22 1:00 - 3:00pm EDT
Poster room numbers indicated below.
Pre-recorded poster presentations can be found below.
| Room | Title | Authors | ||
| 1 | Biodiversity Literacy in Undergraduate Education: Data Literacy, Workforce Training, and the Extended Specimen Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Anna Monfils, Debra Linton, Libby Ellwood, Lisa White | ||
| 1 | Natural History Education DemoCamp Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Anna Monfils, Jennifer Bauer, Elizabeth Leith, Molly Phillips, Julia Robinson, Jessa Watters | ||
| 2 | The Atlas of Living Australia: 10 years supporting Biodiversity Research and Decision Click to view poster with embedded audio. Click to view poster PDF |
Hamish Holewa | ||
| 2 | A decade of digitisation to secure, enhance & mobilise CSIRO’s biological research collections Click to view poster with embedded audio Click to view poster PDF |
Nicole Fisher, Pete Thrall | ||
| 3 | GRSciColl: Registry of Scientific Collections Click to view poster with embedded audio |
Marie Grosjean, Caitlin Chapman, Morten Høfft Gonzalez, Marcos Lopez, Tim Robertson | ||
| 3 | The iDigBio US Collections List: Now Powered By GBIF Click to view poster with embedded audio |
Caitlin Chapman, Ronald Canepa, Chris Wilson, Nicholas Rejack, Marie Grosjean, Morten Høfft, Marcos Gonzalez, Tim Robertson | ||
| 4 | Piloting hosted portals in the GBIF network Click to view poster with embedded audio |
Mélianie Raymond, Morten Høfft, Thomas Stjernegaard Jeppesen, Matthew Blissett, Tim Robertson, Joe Miller | ||
| 4 | Hosted Portal Pilots Fuel Collaboration and Creativity Across North America Click to view poster with embedded audio |
David Jennings, Carole Sinou, Abby Benson, David Bloom, Sharon Grant, James Macklin | ||
| 4 | The Legume Data Portal Click to view poster with embedded audio |
Carole Sinou, Anne Bruneau, Joe Miller | ||
| 5 | Digitization and Management of the National Museum of Natural History, Invertebrate Zoology Collections: Challenges, Workflows, and Solutions Click to view poster PDF (there is no audio) Click to view or download an accompanying slide presentation Click to view or download a second accompanying slide presentation |
William Moser, Katie Ahlfeld, Karen Reed | ||
| 5 | Digitizing the U.S. National Insect Collection Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Jessica Bird, Erin Kolski | ||
| 6 | Capturing California’s flowers: Mobilizing phenological data from herbarium specimens Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Katie Pearson, Jenn Yost | ||
| 6 | Making Parasite-Host Associations Visible using Global Biotic Interactions (GloBI) Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Sullivan, Kathryn, Poelen, Jorrit H., Seltmann, Katja C., & Zaspel, Jennifer M. (2021). Making Parasite-Host Associations Visible using Global Biotic Interactions (Version 1). Zenodo. Citation | ||
| 7 | Accelerating Global Engagement Through Collaboration of Online Biodiversity Data Networks Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Libby Ellwood, Gil Nelson, Hamish Holewa, Dimitris Koureas, Joe Miller | ||
| 7 | Digitization of specimen records in Canada: how far are we? Click to view poster with embedded audio Click to view poster PDF |
Carole Sinou, Anne Bruneau | ||
| 8 | Beyond biodiversity: Digitizing rocks, minerals, and meteorites at NMNH Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Adam Mansur | ||
| 8 | NMNH Paleobiology Department Fossil Data: Volunteering for Better Collection Click to view poster with embedded audio Click to view poster PDF |
Matthew Miller, Holly Little, Amanda Millhouse, Abby Telfer | ||
| 9 | Decade at a Glance: The Role and Impact of the Collections Program Technicians on NMNH Collections in an Ever-Increasing Digital World Click to view poster with embedded audio Click to view poster PDF |
Teresa Hsu, Greg Polley, Alice Fornari, Katie Roberts | ||
| 9 | “Deep Time” of Digitization: History of Biodiversity Digitization at National Museum of Natural History Click to view poster with embedded audio Click to view poster PDF |
Katie Roberts, Kasia Ahern, Jessica Bird, David Bridge, Cailin Meyer, Chris Milensky, Ducky Nguyen, Sylvia Orli | ||
| 10 | Exploring multiple approaches to engage underrepresented students in research with natural history collections Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
David Blackburn, Alnycea Blackwell, Adania Flemming, Jeanette Pirlo, Molly Phillips | ||
| 10 | BCEENET: Connecting digitized natural history collections with undergraduate research experiences Click to view poster with embedded audio Click to view poster PDF |
Janice L. Krumm, Carly N. Jordan, Cecily D. Bronson, Elizabeth K. Shea, Jean L. Woods | ||
| 11 | Smithsonian’s 3D Digitization Pipeline: Management, Automation, and Delivery Click to view poster with embedded audio Click to view poster PDF |
Jon Blundell | ||
| 11 | Symbiota Load this first in a new tab (poster image) Load this second in a new tab (poster audio) Start audio, then switch to poster tab. |
Ed Gilbert, Nico Franz, Katie Pearson, Jenn Yost, Laura Prado, Samanta Orellana | ||