TCN Resources: Difference between revisions
Jump to navigation
Jump to search
| Line 25: | Line 25: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/InvertNet:_An_Integrative_Platform_for_Research_on_Environmental_Change,_Species_Discovery_and_Identification InvertNet] ([http://invertnet.org/ website]) | |valign="top"|[https://www.idigbio.org/wiki/index.php/InvertNet:_An_Integrative_Platform_for_Research_on_Environmental_Change,_Species_Discovery_and_Identification InvertNet] ([http://invertnet.org/ website]) | ||
|valign="top"|2011 | |valign="top"|2011 - 2015 | ||
|valign="top"|[mailto:dietrich@inhs.uiuc.edu Christopher Dietrich] | |valign="top"|[mailto:dietrich@inhs.uiuc.edu Christopher Dietrich] | ||
|valign="top"|robotic scanning of vials, slides and drawers, crowd-sourcing of label data from images | |valign="top"|robotic scanning of vials, slides and drawers, crowd-sourcing of label data from images | ||
| Line 43: | Line 43: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/North_American_Lichens_and_Bryophytes_-_Sensitive_Indicators_of_Environmental_Quality_and_Change Lichens & Bryophytes (LBCC)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/North_American_Lichens_and_Bryophytes_-_Sensitive_Indicators_of_Environmental_Quality_and_Change Lichens & Bryophytes (LBCC)] | ||
|valign="top"|2011 | |valign="top"|2011 - 2015 | ||
|valign="top"|[mailto:cgries@wisc.edu Corinna Gries], [mailto:tom.nash@asu.edu Tom Nash], [mailto:egbiodiversity@gmail.com Ed Gilbert] | |valign="top"|[mailto:cgries@wisc.edu Corinna Gries], [mailto:tom.nash@asu.edu Tom Nash], [mailto:egbiodiversity@gmail.com Ed Gilbert] | ||
|valign="top"|label imaging, using OCR for data capture [http://lbcc1.acis.ufl.edu/?q=project_workflow workflow] | |valign="top"|label imaging, using OCR for data capture [http://lbcc1.acis.ufl.edu/?q=project_workflow workflow] | ||
| Line 52: | Line 52: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/Mobilizing_New_England_Vascular_Plant_Specimen_Data New England Vascular Plants (NEVP)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/Mobilizing_New_England_Vascular_Plant_Specimen_Data New England Vascular Plants (NEVP)] | ||
|valign="top"|2012 | |valign="top"|2012 - 2016 | ||
|valign="top"|[mailto:patrick.sweeney@yale.edu Patrick Sweeney] | |valign="top"|[mailto:patrick.sweeney@yale.edu Patrick Sweeney] | ||
|valign="top"|robotic scanning apparatus for herbarium sheets, specimen-by-specimen label data capture | |valign="top"|robotic scanning apparatus for herbarium sheets, specimen-by-specimen label data capture | ||
| Line 61: | Line 61: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/Creating_A_PALEONICHES PaleoNICHES] | |valign="top"|[https://www.idigbio.org/wiki/index.php/Creating_A_PALEONICHES PaleoNICHES] | ||
|valign="top"|2012 | |valign="top"|2012 - 2015 | ||
|valign="top"|[mailto:blieber@ku.edu Bruce Lieberman] | |valign="top"|[mailto:blieber@ku.edu Bruce Lieberman] | ||
|valign="top"|specimen-by-specimen label data capture | |valign="top"|specimen-by-specimen label data capture | ||
| Line 70: | Line 70: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/The_Macrofungi_Collection_Consortium MacroFungi Collection Consortium (MaCC)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/The_Macrofungi_Collection_Consortium MacroFungi Collection Consortium (MaCC)] | ||
|valign="top"|2012 | |valign="top"|2012 - 2015 | ||
|valign="top"|[mailto:bthiers@nybg.org Barbara Thiers] | |valign="top"|[mailto:bthiers@nybg.org Barbara Thiers] | ||
|valign="top"|label imaging, crowd-sourcing of label data | |valign="top"|label imaging, crowd-sourcing of label data | ||
| Line 79: | Line 79: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/Southwest_Collections_of_Arthropods_Network_(SCAN) Southwest Collections of Arthropods (SCAN)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/Southwest_Collections_of_Arthropods_Network_(SCAN) Southwest Collections of Arthropods (SCAN)] | ||
|valign="top"|2012 | |valign="top"|2012 - 2015 | ||
|valign="top"|[mailto:neil.cobb@nau.edu Neil Cobb] | |valign="top"|[mailto:neil.cobb@nau.edu Neil Cobb] | ||
|valign="top"|visionary digital workflow, specimen-by-specimen label data capture | |valign="top"|visionary digital workflow, specimen-by-specimen label data capture | ||
| Line 88: | Line 88: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/Fossil_Insect_Collaborative:_A_Deep-Time_Approach_to_Studying_Diversification_and_Response_to_Environmental_Change Fossil Insect Collaborative (FIC)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/Fossil_Insect_Collaborative:_A_Deep-Time_Approach_to_Studying_Diversification_and_Response_to_Environmental_Change Fossil Insect Collaborative (FIC)] | ||
|valign="top"|2013 | |valign="top"|2013 - 2017 | ||
|valign="top"|[mailto:dena@colorado.edu Dena Smith] | |valign="top"|[mailto:dena@colorado.edu Dena Smith] | ||
|valign="top"|visionary digital workflow, most specimen data already captured | |valign="top"|visionary digital workflow, most specimen data already captured | ||
| Line 97: | Line 97: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/Developing_a_Centralized_Digital_Archive_of_Vouchered_Animal_Communication_Signals Vouchered Animal Communication Signals (VACS)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/Developing_a_Centralized_Digital_Archive_of_Vouchered_Animal_Communication_Signals Vouchered Animal Communication Signals (VACS)] | ||
|valign="top"|2013 | |valign="top"|2013 - 2017 | ||
|valign="top"|[mailto:msw244@cornell.edu Michael Webster] | |valign="top"|[mailto:msw244@cornell.edu Michael Webster] | ||
|valign="top"|digitizing analog sound recordings, imaging specimens & labels | |valign="top"|digitizing analog sound recordings, imaging specimens & labels | ||
| Line 106: | Line 106: | ||
|- | |- | ||
|valign="top"|[https://www.idigbio.org/wiki/index.php/The_Macroalgal_Herbarium_Consortium:_Accessing_150_Years_of_Specimen_Data_to_Understand_Changes_in_the_Marine/Aquatic_Environment Macroalgal Herbarium Consortium (MHC)] | |valign="top"|[https://www.idigbio.org/wiki/index.php/The_Macroalgal_Herbarium_Consortium:_Accessing_150_Years_of_Specimen_Data_to_Understand_Changes_in_the_Marine/Aquatic_Environment Macroalgal Herbarium Consortium (MHC)] | ||
|valign="top"|2013 | |valign="top"|2013 - 2017 | ||
|valign="top"|[mailto:chris.neefus@unh.edu Chris Neefus] | |valign="top"|[mailto:chris.neefus@unh.edu Chris Neefus] | ||
|valign="top"|imaging herbarium sheets with the eBioBox | |valign="top"|imaging herbarium sheets with the eBioBox | ||
Revision as of 13:26, 13 December 2013
These resources are an at-a-glance introduction to existing Thematic Collection Networks (TCNs), including a volunteer contact and their email for each project, and some rudimentary information about the organisms in their proposal. This information hopes to be an aid to anyone writing a proposal, or who has recently received funding and is looking for tips and advice.
TCN Lightening Round Progress Reports at Summit 3, November 2013
Each TCN gave a succinct digitization progress report: https://www.idigbio.org/content/idigbio-summit-iii-0
TCNs at a Glance
Below is a table of TCN project information. RDCNs are added below for completeness since they work closely with thematic networks.
Note: the number of anticipated specimens and images to be digitized is approximate.
| TCN | Date | Contact with Email | Digitization Methodology | Software | Organisms | # of Specimens/Images | # of Collaborators |
|---|---|---|---|---|---|---|---|
| InvertNet (website) | 2011 - 2015 | Christopher Dietrich | robotic scanning of vials, slides and drawers, crowd-sourcing of label data from images | arthropods | 56.1M / .89M | 14 (1 PEN) (Map) | |
| Tri-trophic (TTD) | 2011 | Katja Seltmann (insects), Rob Naczi (plants) | imaging herbarium sheets with the eBioBox | Arthropod Easy Capture, Symbiota | insects (Hemiptera, Hymenoptera) and vascular plants | 1.6M (insects) 6.1M (plants) / 611,000 | 32 (Map) |
| Lichens & Bryophytes (LBCC) | 2011 - 2015 | Corinna Gries, Tom Nash, Ed Gilbert | label imaging, using OCR for data capture workflow | Symbiota | lichens & bryophytes | 2.3M / 2.3M | 73 (3 PENs) (Map) |
| New England Vascular Plants (NEVP) | 2012 - 2016 | Patrick Sweeney | robotic scanning apparatus for herbarium sheets, specimen-by-specimen label data capture | Symbiota, EMu | vascular plants | 1.29M / 1.29M | 18 (Map) |
| PaleoNICHES | 2012 - 2015 | Bruce Lieberman | specimen-by-specimen label data capture | Specify | fossils: arthropods, brachiopods, echinoderms, and mollusks | 650K / 3600 | 8 (2 PENs) (Map) |
| MacroFungi Collection Consortium (MaCC) | 2012 - 2015 | Barbara Thiers | label imaging, crowd-sourcing of label data | Symbiota | macrofungi | 1.39M / 1.3M | 34 (Map) |
| Southwest Collections of Arthropods (SCAN) | 2012 - 2015 | Neil Cobb | visionary digital workflow, specimen-by-specimen label data capture | Symbiota | ground dwelling arthropods | .73M / 15,125 | 15 (1 PEN) (Map) |
| Fossil Insect Collaborative (FIC) | 2013 - 2017 | Dena Smith | visionary digital workflow, most specimen data already captured | Specify, EMu and other (for home institutions) - developing the iDigPaleo Portal for our main interface. | fossil insects | 500k/200k | 9 (Map) |
| Vouchered Animal Communication Signals (VACS) | 2013 - 2017 | Michael Webster | digitizing analog sound recordings, imaging specimens & labels | birds, frogs, fish and insects | 58,374 / 22,939 | 7 (Map) | |
| Macroalgal Herbarium Consortium (MHC) | 2013 - 2017 | Chris Neefus | imaging herbarium sheets with the eBioBox | macroalgae | 1.14M / 1.14M | 49 (Map) |
RDCNs at a Glance
| RDCN | Contact with Email | Methodology | Organisms | # of Participants |
|---|---|---|---|---|
| VertNet | Dave Bloom | aggregator / facilitator | mammals, birds, fish, herps | mammals (), birds (), fish (12), herps (64) |
| Consortium of California Herbaria (CCH) | David Baxter | aggregator / facilitator | vascular plants | 32 |
| Fishnet2 Collaborative Georeferencing | Hank Bart, Jr. | georeferencing | fish | |
| Mississippi Herbaria Consortium (Magnolia grandiFLORA) | Lucile McCook | aggregator / facilitator | plants | |
| Consortium of Pacific Northwest Herbaria | Ben Legler | aggregator / facilitator | plants | |
| Texas Oklahoma Regional Consortia of Herbaria (TORCH) | Wayne Elisens | aggregator / facilitator | plants |