Data Carpentry
This wiki supports the Data Carpentry Workshop to be held at the University of Florida at iDigBio. (Date to be announced). It is the first in a series of four biodiversity informatics workshops planned in the upcoming year (2014-2015).
Digitization Training Workshops Wiki Home
Planning Team
- François Michonneau (FLMNH - iDigBio)
- Katja Seltmann (TTD-TCN, AMNH)
- Matt Collins (ACIS - iDigBio)
- Dan Stoner (ACIS - iDigBio)
- Deborah Paul (FSU - iDigBio)
- Tracy K. Teal (BEACON)
- Pam Soltis (FLMNH - iDigBio PI)
- Derek Masaki (USGS)
- Shari Ellis (iDigBio)
- Kevin Love (iDigBio)
- Mike Smorul (SESYNC)
- and assistance from Nirav Merchant at iPlant.
Workshop Evaluation
- link to pre-workshop survey
- link here at end of workshop
Agenda
- pre-workshop meeting (online)
- Software installed?
- Instructors available
- Questions?
- pre-workshop meeting / dinner day before
- All welcome. Place/time TBA.
Course Overview - Day 1
8:30-9:00 Introductions / Overview / Why Data Carpentry? / How to organize data projects
9:00-10:00 Better use of spreadsheets (Tracy Teal)
10:00-10:30 Break
10:30-12:00 Better use of spreadsheets part II (Tracy Teal)
12:00-1:30 Lunch (with OpenRefine Demo - Deb Paul)
1:30-3:00 SQL Introduction (Matt Collins)
3:00-3:30 Break
3:30-5:00 SQL part II (Matt Collins)
5:00-5:30 Review / Wrap up for tomorrow
Course Overview - Day 2
8:30-10:00 Introduction to the shell (Tracy Teal)
10:00-10:30 Break
10:30-12:30 Introduction to R (François Michonneau)
12:30-1:30 Lunch (with OpenRefine Demo - Deb Paul)
1:30-3:00 Manipulating and plotting data in R (François Michonneau)
3:00-3:30 Break
3:30-4:30 Getting data in and out of R/Integrating R in your workflow (François Michonneau)
4:30-5:00 Scaling it up: DEMO using iPlant Discovery Environment (DE) (François Michonneau, ...)
5:00-5:30 Advanced Shell (Matt C.)
5:30-6:00 Review / Wrap up / Evaluations and Feedback
Thank you!
Link to Workshop Report
Logistics
- Logistics
- Where to find food
- Workshop Announcement
Remote Participation
Remote participation will be provided via Adobe Connect: [room URL to be decided]
- Remote can join those present for notes in (Google Doc) or (MoPad)?
Presentation Documents
- links to any presentations (like power points) here.
Workshop Recordings
Day 1
- [8:30am-10:00am]
- [10:30am-12:00pm]
- [1:00pm-3:00pm]
- [3:30-6pm]
Day2
- [8:30am-10:00am]
- [10:30am-12:00pm]
- [1:00pm-3:00pm]
- [3:30-6pm]
Data Carpentry Resources and Links
- Inaugural Data Carpentry Workshop by Tracy K. Teal
- Our First Data Carpentry Workshop by Karen Cranston
- Tales from the First Data Carpentry Workshop by Deb Paul
- Data Carpentry Materials on GitHub
- Ten Simple Rules for the Care and Feeding of Scientific Data. Goodman et al
- Code and Data for the Social Sciences: A Practitioner's Guide. Matthew Gentzkow, Jesse M. Shapiro Chicago Booth and NBER March 10,2014
- Nine simple ways to make it easier to (re)use your data. White et al.