Data Carpentry

From iDigBio
Revision as of 14:07, 3 September 2014 by Francoism (talk | contribs)
Jump to navigation Jump to search

This wiki supports the Data Carpentry Workshop to be held at the University of Florida at iDigBio. (Date to be announced). It is the first in a series of four biodiversity informatics workshops planned in the upcoming year (2014-2015).

Digitization Training Workshops Wiki Home

Planning Team

  • François Michonneau (FLMNH - iDigBio)
  • Katja Seltmann (TTD-TCN, AMNH)
  • Matt Collins (ACIS - iDigBio)
  • Dan Stoner (ACIS - iDigBio)
  • Deborah Paul (FSU - iDigBio)
  • Tracy K. Teal (BEACON)
  • Pam Soltis (FLMNH - iDigBio PI)
  • Derek Masaki (USGS)
  • Shari Ellis (iDigBio)
  • Kevin Love (iDigBio)
  • Mike Smorul (SESYNC)
  • Juliet Pulliam (UF)
  • and assistance from Nirav Merchant at iPlant.

Workshop Evaluation

  • link to pre-workshop survey
  • link here at end of workshop

Agenda

Course Overview - Day 1
8:30-9:00 Introductions / Overview / Why Data Carpentry? / How to organize data projects All
9:00-10:00 Better use of spreadsheets, part I Tracy Teal
10:00-10:30 Break
10:30-12:00 Better use of spreadsheets part II Tracy Teal
12:00-1:30 Lunch (with OpenRefine Demo) Deb Paul
1:30-3:00 SQL Introduction Matt Collins
3:00-3:30 Break
3:30-5:00 SQL part II Matt Collins
5:00-5:30 Review / Wrap up for tomorrow
Course Overview - Day 2
8:30-10:00 Introduction to the shell Tracy Teal
10:00-10:30 Break
10:30-12:00 Introduction to R François Michonneau
12:00-1:30 Lunch (Demo)
1:30-3:00 Manipulating and plotting data in R François Michonneau
3:00-3:30 Break
3:30-4:30 Getting data in and out of R: How to integrate R in your workflow François Michonneau
4:30-5:00 Sharing your data and your results: RMarkdown and Figshare François Michonneau
5:00-5:30 Review / Wrap up / Evaluation and Feedback

Future plan: Scaling it up: Demo using the iPlant Discovery Environment (DE)

Link to Workshop Report

Logistics

Remote Participation

Remote participation will be provided via Adobe Connect: [room URL to be decided]

  • Remote can join those present for notes in (Google Doc) or (MoPad)?

Presentation Documents

  • links to any presentations (like power points) here.

Workshop Recordings

Day 1

  • [8:30am-10:00am]
  • [10:30am-12:00pm]
  • [1:00pm-3:00pm]
  • [3:30-6pm]

Day2

  • [8:30am-10:00am]
  • [10:30am-12:00pm]
  • [1:00pm-3:00pm]
  • [3:30-6pm]

Data Carpentry Resources and Links

Retrieved from "http://www.idigbio.org/wiki/index.php?title=Data_Carpentry&oldid=11376"