Overview
iDigBio supports a number of Working Groups. Several working groups are focused on the delivery of short-term objectives, while other standing Working Groups are tasked with ongoing research, development, and improvement activities. This page provides an overview of both current (active) and disbanded (inactive) Working Groups.
The section "Overlap with Other Working Groups" should be used to list subject areas that may duplicate some effort from another Working Group. When Working Group activities stray into these overlapping subject areas then collaboration between working groups is warranted for those tasks.
Active Working Groups
Augmenting OCR (aOCR)
Background: The Augmenting OCR working group formed from the first iDigBio Summit in 2011 out of a community consensus wish to attempt improving OCR output and algorithm tools to speed up the digitization process. Initial group members were suggested by those present at Summit 2011.
Our current working group met, in person, at a
workshop in October 2012 to learn more about each other's use of OCR and OCR output, plan a February 2013 hackathon, develop content for our iSchools 2013 iConference workshop panel, and learn more about the latest developments in handwriting recognition. We are currently hard at work finalizing the
hackathon and
iConference13 plans.
Data Field
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Details
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Status
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Active
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Members
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- Bryan Heidorn, (Chair), Director, School of Information Resources and Library Science, University of Arizona
- Deborah Paul (Co-Chair), iDigBio User Services
- Robert Anglin, Symbiota Developer, LBCC TCN
- Anne Barber, SALIX
- Jason Best, Director Bioinformatics at BRIT, Apiary
- Renato Figueiredo, iDigBio IT
- Ed Gilbert Symbiota Lead Developer, LBCC TCN, MaCC TCN
- Nathan Gnanasambandam, Xerox
- Stephen Gottschalk, Curatorial Assistant, NYBG
- Elspeth Haston, Assistant Curator, Digitisation Royal Botanic Garden Edinburgh
- Daryl Lafferty, SALIX
- Peter Lang, Pre Sales Engineer, ABBYY
- Gil Nelson, iDigBio Digitization
- Nahil Sobh, InvertNet Developer, InvertNet TCN
- William Ulate, Technical Director, Biodiversity Heritage Library (BHL)
- Kimberly Watson, Curatorial Assistant, NYBG Tri-Trophic TCN
- Qianjin Zhang, Graduate Student, University of Arizona, School of Information Resources and Library Science
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Mission & Scope
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Engage experts in the biodiversity and information technology fields to identify opportunities to broadly implement existing effective OCR tools and enhance
existing Machine and Natural Language Processing technologies to meet the needs of the biodiversity community. Want to know more? Contact Bryan Heidorn or Deborah Paul or any other member of the working group. We'd like to hear from you!
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Overlap with Other Working Groups
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Needing access to the specimen label images on the iDigBio server, the aOCR working group overlaps with the cyberinfrastructure working group. This includes OS issues as well as hardware minimum requirements necessary for whatever hack-a-thon type activities the aOCR group persues.
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Links
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Biodiversity Informatics Management Working Group
Data Field
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Details
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Status
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Active
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Members
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- Gil Nelson, iDigBio Digitization (Lead)
- Joanna McCaffrey iDigBio Biodiversity Informatics Manager (co-lead)
- Dorothy Allard, UVM
- Anne Barber, ASU
- Andy Bentley, Biodiversity Institute, U. of Kansas
- Lawrence Gall, Yale, Peabody
- Ed Gilbert, Lichens & Bryophytes, and SCAN TCNs IT, Symbiota
- Les Landrum, ASU
- Austin Mast, FSU Herbarium
- Paul J. Morris , Harvard
- Deborah Paul, iDigBio User Services
- Rich Rabeler, University of Michigan, Ann Arbor
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Mission & Scope
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The role of biodiversity informatics management and biodiversity informatics managers as a recognized profession is becoming increasingly important to digitization programs, biodiversity data management, and to museum organizational hierarchy. The most successful digitization programs visited by Nelson and Paul (2012) in preparation for their paper in Zookeys were directly dependent on the presence of strong biodiversity informatics managers with well-defined roles, supported from the top of the organizational hierarchy, and focused on providing guidance and service to digitization staff and initiatives. The institutionalization of this role will ensure the sustainability of digitization initiatives. Members of the Droid 1 workgroup recognized this need as an important component underlying successful implementation of digitization workflows and practices, and strongly suggested that iDigBio sponsor a working group focused on this issue.
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Overlap with Other Working Groups
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Links
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Working Group Wiki, Listserv
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Cyberinfrastructure (CYWG)
Data Field
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Details
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Status
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Active
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Members
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- Andréa Matsunaga (Co-Lead), iDigBio IT
- Joanna McCaffrey (Co-Lead), iDigBio Program Manager
- Renato Figueiredo, iDigBio IT
- Alex Thompson, iDigBio IT
- Greg Traub, iDigBio IT
- Yonggang Liu, iDigBio IT
- Kyuho Jeong, iDigBio IT
- Casey McLaughlin, iDigBio IT
- James Beach, Paleoniches TCN IT/Co-PI, University of Kansas
- Michael Bevans, Tri-tropic TCN Information Manager for Digitization and Photography
- Andrew Brown KE Software
- Edward Gilbert, Lichens & Bryophytes, and SCAN TCNs IT, Symbiota
- Corinna Gries, Lichens & Bryophytes TCN, PI
- Paul L Heinrich, SCAN TCN IT
- Tony Kirchgessner, Tri-trophic TCN IT, NYBG
- Katja Seltmann, Tri-trophic TCN IT, AMNH
- Nahil Sobh, InvertNet TCN IT, Co-PI
- Omar Sobh, InvertNet TCN IT
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Mission & Scope
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Define, document and test iDigBio service Application Programming Interfaces (APIs) and appliances. The first phase will focus on data ingestion APIs and appliances considering TCN use cases.
Definition and documentation of potential services and appliances for OCR and georeferencing are left to the respective working groups. Definition of data structure for ingestion is left to MISC working group.
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Overlap with Other Working Groups
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Links
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Developing Robust Object to Image to Data (DROID1)
The various preparation-specific DROID working groups was spawned from the
DROID workshop, held in Gainesville, Florida in May 2012. The purpose of this workshop was an exploration of digitization workflows and methods for improving workflow efficiency across preparation types. The DROID 1 working group is focused on flat sheets and packets digitization, primarily as this relates to herbarium collections. Flat Sheets and Packets completed a set of workflows in fall 2012 and published them on
iDigBio's Documentation Page.
An herbarium digitization workshop was spawned from the DROID effort,during which the workflows developed by Flat Sheets and Packets were presented and distributed. A
digitization training workshop wiki has been created to provide links to resources for this and upcoming workshops spawned by the initial DROID workshop.
DROID 1 workflows development also led to considerations of imaging standards, which resulted in the development of iDigBio's statement of
Image File Format Requirements and Recommendations, also published in fall 2012.
Data Field
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Details
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Status
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Active
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Members
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- Gil Nelson, iDigBio Digitization
- Deborah Paul, iDigBio User Services
- Dorothy Allard, UVM
- Anne Barber, ASU
- Edward Gilbert, Lichens & Bryophytes, Macrofungi and SCAN TCNs IT, Symbiota
- Les Landrum, ASU
- Austin Mast, FSU
- Paul J. Morris , Harvard
- Amanda K. Neill, BRIT, Texas A&M University
- Richard Rabeler, University of Michigan, Ann Arbor
- Patrick Sweeney, New England Vascular Plants TCN Co-PI Yale - Peabody
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Mission & Scope
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The Flat Sheets and Packets Working Group (DROID1) is devoting its attention to developing workflow modules and tasks recommendations for vascular and non-vascular plant specimens.
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Overlap with Other Working Groups
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See WG for DROID2 and DROID3
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Links
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Wiki
Training Workshops Wiki
Image File Format Requirements and Recommendations
Flat Sheets and Packets published workflows
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Developing Robust Object to Image to Data (DROID2)
Data Field
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Details
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Status
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Active
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Members
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- Gil Nelson, iDigBio Digitization (Lead)
- Nicole Fisher, ANIC
- Nico Franz, ASU
- Lawrence Gall, Yale, Peabody
- Talia Karim, Univ. of Colorado
- Paul J. Morris, Harvard
- John Oswald
- Deborah Paul, iDigBio User Services
- Edward Riley, Texas A&M
- Katja Seltmann, AMNH
- Petra Sierwald, FMNH
- Margaret Thayer, FMNH
- Jennifer Thomas, KU
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Mission & Scope
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The Pinned Specimens in Trays and Drawers Working Group is devoting its attention to developing workflow modules and task lists for digitizing dry, pinned specimens.
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Overlap with Other Working Groups
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See WG for DROID1 and DROID3
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Links
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Wiki
Photo - First Meeting of DROID2 Working Group
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Developing Robust Object to Image to Data (DROID3): 3D Objects and Things in Spirits
Data Field
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Details
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Status
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Active
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Members
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- Gil Nelson, iDigBio Digitization
- Andy Bentley, Biodiversity Institute, U. of Kansas
- Adam Cohen,Texas Natural History Collections, U. Texas
- Linda Ford, Museum of Comparative Zoology, Harvard
- Talia Karim U. Colorado
- Deborah Paul, iDigBio User Services
- Dean Pentcheff, Natural History Museum of Los Angeles County
- Nelson Rios, Tulane, GeoLocate
- Rob Robins, Florida Museum of Natural History, U. Florida
- Jessica Utrup, Peabody Museum, Yale
- Andy Williston, Museum of Comparative Zoology, Harvard
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Mission & Scope
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The working group will devote its attention to specimens in jars and of greater 3D dimensionality.
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Overlap with Other Working Groups
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See WG for DROID1 and DROID2
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Links
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Wiki
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Education and Outreach
Data Field
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Details
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Status
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Active
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Members
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- Bruce MacFadden, FLMNH
- Austin Hendy, FLMNH
- Cathy Bester, FLMNH
- Betty Dunckel, FLMNH
- Shari Ellis, FLMNH
- Reed Beaman, FLMNH
- David Jennings, FLMNH
- Kevin Love, FLMNH
- Austin Mast, FSU
- Deb Paul, FSU
- Gil Nelson, FSU
- Libby Ellwood, FSU
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Mission & Scope
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This working group will:
- Coordinate Education and Outreach activities
- Communicate with TCNs
- Develop activities of interest to the HUB and TCNs
- Establish regular communication with one Education and Outreach point person from each TCN
- Plan for, and implement, Education and Outreach Workshop
- Facilitate common goals
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Overlap with Other Working Groups
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Links
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Georeferencing Working Group (GWG)
Data Field
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Details
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Status
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Active
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Members
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- John Wieczorek, Berkeley, MVZ
- Mary Barkworth, Utah State Univ, UTC
- Reed Beaman, FLMNH
- David Bloom, Berkeley, MVZ
- Una Farrell (Paleoniches TCN, Co-PI)
- Paul Heinrich (SCAN TCN, Co-PI)
- Gil Nelson, iDigBio Digitization
- Deborah Paul, iDigBio User Services
- Nelson Rios, Tulane, GeoLocate
- Carol Spencer, Berkeley, MVZ
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Mission & Scope
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We've started building a community of expert Georeferencing trainers from our first Train-the-Trainers (TTT) Georeferencing Workshop in October 2012 and we're getting ready for TTT #2 in August 2013. We're putting the finishing touches on some new videos anyone can use for training. We're also helping to advance the capabilities of Georeferencing tools. Want to know more? Contact any member of the working group. We'd love to hear from you.
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Overlap with Other Working Groups
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Links
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Georeferencing Wiki: a compiled, annotated listing of helpful links / resources for georeferencing
Georeferencing Resources: descriptions and links to what's available (wiki, list serve, forum,... on this website for help with georeferencing.
Georeferencing Discussion Forum: got a georeferencing question? Ask us!
Georeferencing Working Group Wiki: about the working group, meeting notes and links to documentation from the working group.
GWG listserve
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Minimum Information Standards, Authority Files, & Semantics (MISC)
Data Field
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Details
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Status
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Active
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Members
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- Gil Nelson, iDigBio Digitization (Co-Lead)
- Katja Seltmann, AMNH (Co-Lead)
- Dorothy Allard, UVM
- Reed Beaman, FLMNH
- Stan Blum, California Academy of Sciences
- John Deck, UC Berkeley
- Andrea Matsunaga, iDigBio IT
- Joanna McCaffrey, iDigBio Biodiversity Informatics Manager
- Paul J. Morris, Harvard
- Deborah Paul, iDigBio User Services
- Dean Pentcheff, Natural History Museum of Los Angeles County
- Petra Sierwald, FMNH
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Mission & Scope
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1) Establish the working group and its goals, with the guidance of participants from the MISC breakout group from iDigBio's It Standards workshop. 2) Document basic assumptions underpinning a minimal information for scientific collections expectation. 3) Develop a document outlining and providing a rationale for required, minimal, desired, and supplementary data elements to be provided by iDigBio contributors. 4) Develop guidelines for data validation, training and assistance to iDigBio contributors for configuring data for ingestion into the iDigBio portal.
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Overlap with Other Working Groups
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The overlap between the MISC and Authority Files Working groups prompted merging into a single working group.
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Links
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Working Group Wiki, Discussion Forum
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Paleontology
Data Field
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Details
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Status
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Active
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Members
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- Bruce Lieberman (Lead), University of Kansas
- Laurie Anderson, South Dakota School of Mines
- David Bloom, VertNet, UC Berkeley
- Greg Dietl, PRI
- Jere Lipps, John Cooper Museum
- Bruce MacFadden, FLMNH
- Timothy Rowe, University of Texas
- Katja Seltmann, AMNH
- Dena Smith, Colorado
- Kathleen Springer, San Bernardino County Museum
- Barbara Thiers, NYBG
- Sophie Warny, LSU
- Tim White, Yale
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Mission & Scope
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This group is currently being formed. One of the group's first tasks will be to define a Mission and Scope. Broadly, the group will maintain awareness of digitization activities and needs within the Paleontology community, and promote communication between Neontology/Paleontology/Information Technology partners.
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Overlap with Other Working Groups
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Links
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Listserv, Discussion Forum, Working Group Wiki
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Public Participation in Digitization
Data Field
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Details
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Status
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Active
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Members
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- Austin Mast (Lead)
- Michael Denslow NEON
- Libby Ellwood, iDigBio FSU
- Betty Dunckel FLMNH
- Bruce MacFadden, FLMNH
- Tom Nash, ASU
- Gil Nelson, iDigBio Digitization
- Deborah Paul, iDigBio User Services
- Nelson Rios, Tulane, GeoLocate
- Andrew Sallans
- Blanka Shaw , Duke
- Jon Shaw, Duke
- Barbara Thiers, NYBG
- Matt von Konrat, FMNH
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Mission & Scope
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Identify and improve aspects of biodiversity digitization workflows that can be newly architected or enhanced to take advantage of public participation.
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Overlap with Other Working Groups
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Links
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Listserv, Working Group Wiki, Joint Public Participation in Digitization/Eductation & Outreach Workshop
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Strategic Communication Interest Group
Data Field
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Details
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Status
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Active
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Members
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Mission & Scope
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We will be developing a strategic communications plan and organizing an advisory panel of communications experts, corporate social responsibility and fundraising experts, and key stakeholders from the collections community. Our collective charge is: (1) to develop a unified platform for communicating the importance of digitization efforts; (2) to identify specific needs of the collection community, develop strategies for addressing these needs through communications activities (including education and outreach), and formalize goals and objectives; and (3) to design implementable activities that can meet our goals/objectives and effectively engage iDigBio target audiences. We will provide recommendations to iDigBio that increase the momentum of digitization/outreach activities on a national scale and ensure the long-term sustainability of these efforts.
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Overlap with Other Working Groups
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Links
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Inactive Working Groups
Authority Files
Data Field
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Details
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Status
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Merged: The Authority Files Working Group has merged with the MISC Working Group, with Katja Seltmann and Gil Nelson as Co-Leads. See below: Minimum Information Standards, Authority Files, & Semantics.
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Original Members (Now Included Below)
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- Greg Riccardi (Lead)
- Dorothy Allard, Univ. Vermont, Montpellier
- Stan Blum, California Academy of Sciences
- Andrea Matsunaga , iDigBio IT
- Paul J. Morris, Harvard
- Gil Nelson, iDigBio
- Deb Paul, iDigBio User Services
- Katja Seltmann, AMNH
- Dean Pentcheff, Natural History Museum of Los Angeles County
- Petra Sierwald, FMNH
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Mission & Scope
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Overlap with other Working Groups
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Links
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Intellectual Property Policy
Data Field
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Details
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Status
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Inactive
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Members
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Mission & Scope
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Produce a clear Intellectual Property Policy to establish data ownership rights and data re-use requirements related to content presented via iDigBio by collections and institutions.
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Overlap with Other Working Groups
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None identified
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Links
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Final Published Document
Note: This document is open for community comment
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