Fluid Preserved Arthropds: Difference between revisions

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==Sign up for the Fluid-preserved Arthropod and Microscopic Imaging Listserv (IDIGBIOINVI-L)==
==Sign up for the Fluid-preserved Arthropod and Microscopic Imaging Listserv (IDIGBIOINVI-L)==
'''Resource:''' IDIGBIOINVI-L@LISTS.UFL.EDU<br />
'''Resource:''' IDIGBIOINVI-L@LISTS.UFL.EDU<br />
'''Purpose:''' This working group's goals are to support paleo digitization efforts.<br />
'''Purpose:''' This working group's goals are to facilitate sharing of imaging techniques across the community.<br />
'''Subscribe:'''To add yourself to the list, email listserv@lists.ufl.edu with the following command in the email:
'''Subscribe:'''To add yourself to the list, email listserv@lists.ufl.edu with the following command in the email:
subscribe IDIGBIOINVI-L first_name last_name<br />
subscribe IDIGBIOINVI-L first_name last_name<br />
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**[[Media:Medrano_imaging_2014.pdf|Mike Medrano’s DIY system for stacking images]]
**[[Media:Medrano_imaging_2014.pdf|Mike Medrano’s DIY system for stacking images]]
*18 March 2014, Noon-1 p.m., Brian Patrick, Imaging spiders [http://idigbio.adobeconnect.com/p5pzur5p1zf/ Meeting Recording]
*18 March 2014, Noon-1 p.m., Brian Patrick, Imaging spiders [http://idigbio.adobeconnect.com/p5pzur5p1zf/ Meeting Recording]
*15 April 2014, Noon-1:00 p.m., Gisela Canales, High speed and high resolution imaging with NanoZoomer
*15 April 2014, Noon-1:00 p.m., Gisela Canales, High speed and high resolution imaging with NanoZoomer [http://idigbio.adobeconnect.com/p21s1cjb4vu/ Meeting Recording]
*13 May 2014, Noon-1:00 p.m., Colin Favret (University of Montreal), High-throughput Scanning for Microscopic Slides
**[https://www.idigbio.org/sites/default/files/working-groups/INVI/BrantleyImages.zip ZIP file containing test images from Gisela Canales (download only)]
*13 May 2014, Noon-1:00 p.m., Colin Favret (University of Montreal), High-throughput Scanning for Microscopic Slides [http://idigbio.adobeconnect.com/p2wz0njodu8/ Meeting Recording]
**[[Media:Chat_box_2014-05-13.pdf|Chat box notes from meeting]]
**[http://www.openmicroscopy.org/site/support/bio-formats5/supported-formats.html OMERO supported file formats]
**[https://www.idigbio.org/wiki/images/b/be/LAS_Specimen_Imaging_Manual_FMNH.pdf Field Museum Leica Suite V 4.2 Imaging Manual by Gracen Brilmyer]
*17 June 2014, Noon-1:00 p.m., Rob Meyer (Meyer Instruments), The Use of Scanners in Insect Photography [http://idigbio.adobeconnect.com/p55frn2nbh4/ Meeting Recording]
**[https://www.idigbio.org/sites/default/files/working-groups/INVI/MyerFlyImages.zip ZIP file of sample fly images from Robert Myers (download only)]
**[[Media:Chat_2014-06-17.pdf|Chat box comments 2014-06-17]]
**[[Media:Imaging_Insects_with_Scanners.pdf|PDF of PowerPoint presentation]]
*16 September 2014, Noon-1:00 p.m., Gene Cooper, Graham Bird, Naomi Cooper (GIGAmacro ), High Quality Imaging of Biological Specimens [http://idigbio.adobeconnect.com/p5enlbyx8jb/ Meeting Recording]
**[http://www.gigamacro.com GIGAmacro.com]
**[[Media:Chat_2014-09-16.pdf|Chat box entries]]
*15 October 2014, Noon-1:00 p.m. EDT, Rob Meyer and Scott Blakely, High resolution scanning of insects on microscopic slides.[http://idigbio.adobeconnect.com/p96f1o1vwem/ Meeting Recording]
**[[Media:Chat_10-15-2014.pdf|Chat Box Entries]]
This meeting/webinar is a follow-up to a previous meeting (15 April 2014) featuring the Nanozoomer scanner by Hamamatsu. At the earlier webinar, Hamamatsu scanners were deemed to have limited use for the purposes of scanning microscopic slides of biological specimens due to their limited depth of field (approximately 100 um). Rob Meyer reports that these scanners have been tweaked and are now able to reach up to 2.0 mm depth of field, enough to scan most insects under a cover slip. Hamamatsu offers scanners that can accommodate multiple slides (6, 210 or 320) for fully automated XYZ scanning.


==Fluid-preserved arthropod imaging and Microscopic Slide Workshopo Ann Arbor, MI, September 16-18, 2013)==
==Fluid-preserved arthropod imaging and Microscopic Slide Workshopo Ann Arbor, MI, September 16-18, 2013)==

Latest revision as of 13:04, 15 October 2014

This Wiki supports activities of the Fluid-preserved Arthropod and Microscopic Slide Imaging Interest Group.

iDigBio's Digitization Resources Wiki Home

Sign up for the Fluid-preserved Arthropod and Microscopic Imaging Listserv (IDIGBIOINVI-L)

Resource: IDIGBIOINVI-L@LISTS.UFL.EDU
Purpose: This working group's goals are to facilitate sharing of imaging techniques across the community.
Subscribe:To add yourself to the list, email listserv@lists.ufl.edu with the following command in the email: subscribe IDIGBIOINVI-L first_name last_name
Example: subscribe IDIGBIOINVI-L Jane Doe

Twitter

For meeting and other related announcements via Twitter
Follow @iDigGilnelson

Working Group Meetings

Meetings are held online at https://idigbio.adobeconnect.com/invertimaging

This meeting/webinar is a follow-up to a previous meeting (15 April 2014) featuring the Nanozoomer scanner by Hamamatsu. At the earlier webinar, Hamamatsu scanners were deemed to have limited use for the purposes of scanning microscopic slides of biological specimens due to their limited depth of field (approximately 100 um). Rob Meyer reports that these scanners have been tweaked and are now able to reach up to 2.0 mm depth of field, enough to scan most insects under a cover slip. Hamamatsu offers scanners that can accommodate multiple slides (6, 210 or 320) for fully automated XYZ scanning.

Fluid-preserved arthropod imaging and Microscopic Slide Workshopo Ann Arbor, MI, September 16-18, 2013)

Meeting Notes

Helpful Links

Image Sharing and Critique

Standard Views for Fluid-preserved Arthropods

Microscopic Slide Imaging

  • Taxonomic value
  • Capturing the organism
  • Available slide-scanning technology


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