Drawer Imaging Group: Difference between revisions
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*[http://www.csiro.au/en/Organisation-Structure/Divisions/Ecosystem-Sciences/NicoleFisher.aspx Nicole Fisher (co-coordinator)], [http://www.csiro.au/places/ANIC Australian National Insect Collection] | *[http://www.csiro.au/en/Organisation-Structure/Divisions/Ecosystem-Sciences/NicoleFisher.aspx Nicole Fisher (co-coordinator)], [http://www.csiro.au/places/ANIC Australian National Insect Collection] | ||
*[https://www.idigbio.org/content/meet-idigbio-staff-interview-gil-nelson Gil Nelson (co-coordinator)], [http://idigbio.org iDigBio] | *[https://www.idigbio.org/content/meet-idigbio-staff-interview-gil-nelson Gil Nelson (co-coordinator)], [http://idigbio.org iDigBio] | ||
*[http://www.nhm.ac.uk/research-curation/about-science/staff-directory/science-facilities/v-blagoderov/index.html Vladimir Blagoderov], [http://www.nhm.ac.uk/index.html; Natural History Museum] | |||
*[http://www.ars.usda.gov/pandp/people/people.htm?personid=39392 Matthew Buffington], [http://www.ars.usda.gov/main/site_main.htm?modecode=12-45-49-00 Systematic Entomology Laboratory, National Museum of Natural History] | *[http://www.ars.usda.gov/pandp/people/people.htm?personid=39392 Matthew Buffington], [http://www.ars.usda.gov/main/site_main.htm?modecode=12-45-49-00 Systematic Entomology Laboratory, National Museum of Natural History] | ||
*[http://deanslab.org/ Andy Deans], [http://sites.psu.edu/frost/ Frost Entomological Museum at Penn State] | *[http://deanslab.org/ Andy Deans], [http://sites.psu.edu/frost/ Frost Entomological Museum at Penn State] | ||
*[http://www.inhs.illinois.edu/staff/index.php?action=list&user_name=chdietri Chris Dietrich, | *[http://www.inhs.illinois.edu/staff/index.php?action=list&user_name=chdietri Chris Dietrich], [http://www.inhs.illinois.edu/ Illinois Natural History Survey] | ||
*[http://australianmuseum.net.au/staff/paul-flemons Paul Flemons], [http://australianmuseum.net.au/ Australian Museum] | *[http://australianmuseum.net.au/staff/paul-flemons Paul Flemons], [http://australianmuseum.net.au/ Australian Museum] | ||
*[https://ag.purdue.edu/entm/Pages/Profile.aspx?strAlias=jdhollan&intDirDeptID=13 Jeff Holland], [https://ag.purdue.edu/entm/Pages/default.aspx Purdue] | *[https://ag.purdue.edu/entm/Pages/Profile.aspx?strAlias=jdhollan&intDirDeptID=13 Jeff Holland], [https://ag.purdue.edu/entm/Pages/default.aspx Purdue] | ||
*[mailto: | *[mailto:oleksandr.holovachov@nrm.se Oleksandr Holovachov] [http://www.nrm.se/en/menu/researchandcollections/departments/invertebratezoology/staff/oleksandrholovachov.9065.html Swedish Museum of Natural History] | ||
*[https://www.idigbio.org/content/meet-joanna-mccaffrey-idigbio-biodiversity-informatics-manager Joanna McCaffrey], [http://idigbio.org iDigBio] | *[mailto:cjohnson@amnh.org Chris Johnson], [http://www.amnh.org/our-research/staff-directory/christine-johnson American Museum of Natural History] | ||
* | *[https://www.idigbio.org/content/meet-joanna-mccaffrey-idigbio-biodiversity-informatics-manager Joanna McCaffrey], [http://idigbio.org iDigBio] | ||
*[http://www.utexas.edu/tmm/npl/beachcombing/a_molineux.html Ann Molineux], [http://www.utexas.edu/tmm/ The University of Texas at Austin] | |||
*[http://www.upcrc.illinois.edu/team/research-ext.html# David Raila], [http://cs.illinois.edu University of Illinois, Computer Sciences] | |||
*[http://www.zsm.mwn.de/hym/e/stefanschmidt.htm Stefan Schmidt], [http://www.zsm.mwn.de/ Zoologische Staatssammlung München] | *[http://www.zsm.mwn.de/hym/e/stefanschmidt.htm Stefan Schmidt], [http://www.zsm.mwn.de/ Zoologische Staatssammlung München] | ||
* [http://www.naturkundemuseum-berlin.de/en/institution/mitarbeiter/ | *[http://www.naturkundemuseum-berlin.de/en/institution/mitarbeiter/?Fsize=\\\\\\\%270&Lightversion=1/ Bernhard Schurian,] [http://www.naturkundemuseum-berlin.de/en/ Museum fuer Naturkunde Berlin] | ||
*[http://biodiversity.ku.edu/jennifer-thomas Jennifer Thomas,] [http://entomology.biodiversity.ku.edu/ University of Kansas, Biodiversity Institute, Entomology] | *[http://www.naturkundemuseum-berlin.de/en/institution/mitarbeiter/kroupa-alexander/?Fsize=\\\\\\\%270&Lightversion=1/ Alexander Kroupa,] [http://www.naturkundemuseum-berlin.de/en/ Museum fuer Naturkunde Berlin] | ||
*[http://biodiversity.ku.edu/jennifer-thomas Jennifer Thomas,] [http://entomology.biodiversity.ku.edu/ University of Kansas, Biodiversity Institute, Entomology] | |||
*[http://www.southbank.qm.qld.gov.au/Find+out+about/Behind+the+Scenes/Scientific+illustrations/Insect+illustrators/Geoff+Thompson Geoff Thompson], [http://www.qm.qld.gov.au/ Queensland Museum] | *[http://www.southbank.qm.qld.gov.au/Find+out+about/Behind+the+Scenes/Scientific+illustrations/Insect+illustrators/Geoff+Thompson Geoff Thompson], [http://www.qm.qld.gov.au/ Queensland Museum] | ||
*[http:// | *Luc Willemse [http://sciencecentra.nl/leden/naturalis Naturalis Biodiversity Center] | ||
*[https://ag.purdue.edu/entm/Pages/Profile.aspx?strAlias=jzaspel&intDirDeptID=13 Jennifer Zaspel], [https://ag.purdue.edu/entm/Pages/default.aspx Purdue] | *[https://ag.purdue.edu/entm/Pages/Profile.aspx?strAlias=jzaspel&intDirDeptID=13 Jennifer Zaspel], [https://ag.purdue.edu/entm/Pages/default.aspx Purdue] | ||
==Collaborative Notes and Interest Group Documents== | ==Collaborative Notes and Interest Group Documents== | ||
*[https://docs.google.com/document/d/1-YHPmcIgUF7EuXSyj572jVEIRYsuNjBhXoxwG3TnLTo/edit Collaborative Notes Document] | *[https://docs.google.com/document/d/1-YHPmcIgUF7EuXSyj572jVEIRYsuNjBhXoxwG3TnLTo/edit Collaborative Notes Document] | ||
*[https://docs.google.com/document/d/1wc7V6MeJ5uOjfqfPz7vDFtHNRvmhKNA3qV1Qv_6awuQ/edit?usp=sharing Chris Johnson's questions document] | |||
*[https://docs.google.com/spreadsheets/d/1p7huKZ_thDh29EBSYDGiX52EIm0MEj6Uu0DZ7HBuLtY/edit?usp=sharing Chris Johnson's whole-drawer imaging specifications spreadsheet] | |||
==Presentations (PDFs and links)== | ==Presentations (PDFs and links)== | ||
*[ | * [[Media:Algemene_presentatie_FCD_ENG.pdf|Collections Digitization at Naturalis Biodiversity Center, Joost van Leusen]] | ||
*[ | * [[Media:Drawer_digitisation_v2.pdf|Drawer Registration Project, Naturalis Bioidiversity Center, Joost van Leusen]] | ||
*[ | * [[Media:Geology_Street_v2.pdf|Geologystreet, Naturalis Biodiversity Center, Joost van Leusen]] | ||
*[http://vimeo.com/69077229 MetaData Creator software (Vimeo)] | * [http://vimeo.com/69077229 MetaData Creator software, Vlad Blagoderov (Vimeo)] | ||
*[ | * [[Media:Dig-overview.pdf|InvertNet Robotic Whole-drawer imaging project, Chris Dietrich & David Raila]] | ||
* [[Media:AnnM_iDigBio-wholedrawer-imaging.pdf|Whole-drawer digitization in paleontology collections, Ann Molineux]] | |||
* [[Media:WDD_Fisher.pdf|Whole-drawer digitisation at Australian National Insect Collection, Nicole Fisher]] | |||
* [[Media:GT_Hasselblad_Drawer_Talk.pdf|Hasselblad H4D-200MS Drawer Imaging, Geoff Thompson, Queensland Museum]] | |||
* [[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]] | |||
* DScan, Stefan Schmidt | |||
** [[Media:Idigbio_dscan.pdf|PDF version]] | |||
** [http://idigbio.org/sites/default/files/working-groups/whole-drawer/idigbio_dscan.pptx Power Point version] | |||
* [[Media:WDD_2014.pdf|Digitization efforts at the MfN (Bernhard Schurian)]] | |||
** [[Media:Chat_2014-03-19.pdf|Chat box entries for 2014-03-19 meeting]] | |||
* [[Media:2014_WDD_-_Germars_virtual_collection.pdf|Whole-drawer imaging of insect collections of E.-F. Germar in the Zoological Museum of Lviv National University (Ukraine), Oleksandr Holovachov]] | |||
** [[Media:Chat_History_2014-04-22.pdf|Chat Box entries for the 2014-04-22 meeting]] | |||
== Relevant Papers == | == Relevant Papers and Documents== | ||
*[http://www.pensoft.net/journals/zookeys/article/3083/results-and-insights-from-the-ncsu-insect-museum-gigapan-project Results and insights from the NCSU Insect Museum GigaPan project, Bertone, et al.] | *[http://www.pensoft.net/journals/zookeys/article/3083/results-and-insights-from-the-ncsu-insect-museum-gigapan-project Results and insights from the NCSU Insect Museum GigaPan project, Bertone, et al.] | ||
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*[http://www.pensoft.net/journals/zookeys/article/3571/invertnet-a-new-paradigm-for-digital-access-to InvertNet: a new paradigm for digital access to invertebrate collections, Dietrich, et al.] | *[http://www.pensoft.net/journals/zookeys/article/3571/invertnet-a-new-paradigm-for-digital-access-to InvertNet: a new paradigm for digital access to invertebrate collections, Dietrich, et al.] | ||
*[http://www.pensoft.net/journals/zookeys/article/3115/dscan DScan – a high-performance digital scanning system for entomological collections, Schmidt, et al.] | *[http://www.pensoft.net/journals/zookeys/article/3115/dscan DScan – a high-performance digital scanning system for entomological collections, Schmidt, et al.] | ||
*[http://www.repository.naturalis.nl/document/453900 Digitaliseren van de entomologische collecties van Naturalis Biodiversity Center, Leusen, et. al] | *[http://www.repository.naturalis.nl/document/453900|Digitaliseren van de entomologische collecties van Naturalis Biodiversity Center, Leusen, et. al] | ||
*[ | * [[Media:Entomologische_Berichten_sept_2012_EB_72_%285%29_259-262_EN.pdf|Digitization of the entomological collections of Naturalis Biodiversity Center, Leusen paper referenced above, translated to English]] | ||
*[http://pppubs.com/resources/Drawer-imaging-guide.pdf Guide to digitising whole drawers of specimens by Bryan Kalms] | *[http://pppubs.com/resources/Drawer-imaging-guide.pdf Guide to digitising whole drawers of specimens by Bryan Kalms] | ||
* [[Media:Scanner_build_prelim1.pdf|Building a Long-Bed Inverted Scanner for Digitizing Biological Collections, Jeff Holland]] | |||
* [[Media:Marriage_Sci-art_and_fine_art.pdf|A Marriage of Science and Contemporary Art-working with Maria Fernanda Cardoso, Geoff Thompson, Queensland Museum]] | |||
* [[Media:1742-9994-10-55.pdf|Biodiversity into your hands - A call for a virtual global natural history 'metacollection', Michael Balke, Stefan Schmidt, et al]] | |||
* [[Media:Soup_for_Crowds_pf_smallversion.pdf|Soup for crowds: A new source of data on insect richness, diversity and abundance, Paul Flemons and Beth Mantle]] | |||
* [[Media:J.2041-210X.2010.00051.x.pdf|Bycatches of ecological field studies: bothersome or valuable?, Sascha Buchholz, Martin Kreuels, Andreas Kronshage, Heinrich Terlutter, and Oliver-D. Finch]] | |||
== Relevant Links == | == Relevant Links == | ||
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*[http://www.gigapan.com/gigapans?order=most_popular&query=ncsu Whole drawer scanning at the NCSU Insect Museum] | *[http://www.gigapan.com/gigapans?order=most_popular&query=ncsu Whole drawer scanning at the NCSU Insect Museum] | ||
*[https://www.idigbio.org/sites/default/files/working-groups/whole-drawer/Screen%20Shot%202013-05-09%20at%204.11.19%20PM.png Some of the members at the second meeting] | *[https://www.idigbio.org/sites/default/files/working-groups/whole-drawer/Screen%20Shot%202013-05-09%20at%204.11.19%20PM.png Some of the members at the second meeting] | ||
*[http://www.velehanden.nl/projecten/bekijk/details/project/nat_nbc Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)] | |||
*[mailto:IDIGBIOWDD-L@LISTS.UFL.EDU, listserv] IDIGBIOWDD-L@LISTS.UFL.EDU | *[mailto:IDIGBIOWDD-L@LISTS.UFL.EDU, listserv] IDIGBIOWDD-L@LISTS.UFL.EDU | ||
Latest revision as of 13:42, 8 December 2014
iDigBio's Digitization Resources Wiki Home
International Whole-Drawer Digitization Interest Group
This page is devoted to resources and discussion for whole-drawer and bulk imaging of dried, pinned insect collection drawers and related bulk specimen containers. The interest group schedules regular discussion sessions via Adobe Connect for the purpose of sharing techniques, strategies, uses, improvements, and technology associated with producing a single image of an entire insect drawer. Resources, related documents, and discussion notes are stored below.
Interest Group Members
- Nicole Fisher (co-coordinator), Australian National Insect Collection
- Gil Nelson (co-coordinator), iDigBio
- Vladimir Blagoderov, Natural History Museum
- Matthew Buffington, Systematic Entomology Laboratory, National Museum of Natural History
- Andy Deans, Frost Entomological Museum at Penn State
- Chris Dietrich, Illinois Natural History Survey
- Paul Flemons, Australian Museum
- Jeff Holland, Purdue
- Oleksandr Holovachov Swedish Museum of Natural History
- Chris Johnson, American Museum of Natural History
- Joanna McCaffrey, iDigBio
- Ann Molineux, The University of Texas at Austin
- David Raila, University of Illinois, Computer Sciences
- Stefan Schmidt, Zoologische Staatssammlung München
- Bernhard Schurian, Museum fuer Naturkunde Berlin
- Alexander Kroupa, Museum fuer Naturkunde Berlin
- Jennifer Thomas, University of Kansas, Biodiversity Institute, Entomology
- Geoff Thompson, Queensland Museum
- Luc Willemse Naturalis Biodiversity Center
- Jennifer Zaspel, Purdue
Collaborative Notes and Interest Group Documents
- Collaborative Notes Document
- Chris Johnson's questions document
- Chris Johnson's whole-drawer imaging specifications spreadsheet
Presentations (PDFs and links)
- Collections Digitization at Naturalis Biodiversity Center, Joost van Leusen
- Drawer Registration Project, Naturalis Bioidiversity Center, Joost van Leusen
- Geologystreet, Naturalis Biodiversity Center, Joost van Leusen
- MetaData Creator software, Vlad Blagoderov (Vimeo)
- InvertNet Robotic Whole-drawer imaging project, Chris Dietrich & David Raila
- Whole-drawer digitization in paleontology collections, Ann Molineux
- Whole-drawer digitisation at Australian National Insect Collection, Nicole Fisher
- Hasselblad H4D-200MS Drawer Imaging, Geoff Thompson, Queensland Museum
- Slide imaging at Naturalis Biodiversity Center, Joost van Leusen
- DScan, Stefan Schmidt
- Digitization efforts at the MfN (Bernhard Schurian)
- Whole-drawer imaging of insect collections of E.-F. Germar in the Zoological Museum of Lviv National University (Ukraine), Oleksandr Holovachov
Relevant Papers and Documents
- Results and insights from the NCSU Insect Museum GigaPan project, Bertone, et al.
- Whole-drawer imaging for digital management and curation of a large entomological collection, Mantle, et al.
- InvertNet: a new paradigm for digital access to invertebrate collections, Dietrich, et al.
- DScan – a high-performance digital scanning system for entomological collections, Schmidt, et al.
- van de entomologische collecties van Naturalis Biodiversity Center, Leusen, et. al
- Digitization of the entomological collections of Naturalis Biodiversity Center, Leusen paper referenced above, translated to English
- Guide to digitising whole drawers of specimens by Bryan Kalms
- Building a Long-Bed Inverted Scanner for Digitizing Biological Collections, Jeff Holland
- A Marriage of Science and Contemporary Art-working with Maria Fernanda Cardoso, Geoff Thompson, Queensland Museum
- Biodiversity into your hands - A call for a virtual global natural history 'metacollection', Michael Balke, Stefan Schmidt, et al
- Soup for crowds: A new source of data on insect richness, diversity and abundance, Paul Flemons and Beth Mantle
- Bycatches of ecological field studies: bothersome or valuable?, Sascha Buchholz, Martin Kreuels, Andreas Kronshage, Heinrich Terlutter, and Oliver-D. Finch
Relevant Links
- Drawer Digitization Project - Hymenoptera (Zoologische Staatssammlung in Munich)
- Drawer Digitisation Project - Hymenoptera (United States National Museum)
- Whole drawer scanning at the NCSU Insect Museum
- Some of the members at the second meeting
- Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)
- listserv IDIGBIOWDD-L@LISTS.UFL.EDU
