IDigBio Virtual Appliances: Difference between revisions

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'''iDigBio Virtual Appliance'''
[[Category:CYWG]]
[[Category:Appliance]]
[[Category:Specify]]
[[Category:Arthropod Easy Capture]]
[[Category:Georeferencing calculator]]


Biology collection management software tools typically depends upon multiple software packages, such as databases, web servers, image manipulation libraries, among others. This complexity makes it difficult for end users to install and deploy these applications in use cases including training, technology evaluation, and management of small collections. To remove the burden on installing multiple software dependencies and facilitating the deployment of bio-collections software, the iDigBio IT team works with the community to package and make available pre-configured virtual appliances. Appliances leverage virtualization technologies to provide a user with a turnkey solution to run collections software (on their desktops, local servers, or cloud servers); users simply download the appliance and run it without the need to worry about installing and configuring additional software. An appliances runs web server inside so that you can connect to it through web browser. 


Biology collection management software tools typically depends upon multiple software packages, such as databases, Web servers, image manipulation libraries, among others. This complexity makes it difficult for end users to install and deploy these applications in use cases including training, technology evaluation, and management of small collections. To remove the burden on installing multiple software dependencies and facilitating the deployment of bio-collections software, the iDigBio IT team works with the community to packages and makes available pre-configured virtual appliances. Appliances leverage virtualization technologies to provide a user with a turnkey solution to run collections software (on their desktops, local servers, or cloud servers); users simply download the appliance and run it without the need to worry about installing and configure additional software.
Below is a list of iDigBio virtual appliances. These appliances are aimed at technology evaluation and training use cases, and gathering feedback from the community.
 
 
Below is a list of iDigBio virtual appliances. These appliances are currently aimed at technology evaluation and training use cases, and to gather feedback from the community
 
- Specify Appliance
- Arthropod Easy Capture Appliance
- Georeferencing Calculator Appliance
 


iDigBio welcomes proposals from the community to create virtual appliances. To submit a proposal, please visit https://www.idigbio.org/content/appliance-proposal
iDigBio welcomes proposals from the community to create virtual appliances. To submit a proposal, please visit https://www.idigbio.org/content/appliance-proposal


==Required software for using a virtual appliance==


To run the appliance, you need VMware player (Windows and Linux) or VirtualBox(Windows, Linux and Mac). Below is the links for download.
To run a virtual appliance, you need one of VMware player (Windows and Linux), VMware fusion(Mac) or VirtualBox(Windows, Linux and Mac) . Below are the links for download. We call this program Hypervisor.  
 
===Download links===
====VMware workstation (Windows and Linux)====
http://www.vmware.com/support/download-player
http://www.vmware.com/support/download-player


https://www.virtualbox.org/wiki/Downloads
'''Specify Appliance'''
Packaged software
- MySQL
- Java Runtime Environment
- Specify 6.5
- Specify Thinclient
- VNCServer
- GNOME
- Configuration Console
You can either use Specify thin client or thick client. Thick client is a full-feature Specify itself meaning that there is no functional restriction. Thin client is currently under active development planning to release with Specify 7 and has only frequently used features such as data entry and quarry.
Appliance download link
http://www.acis.ufl.edu/~xetron/Downloads/Specify_v2.zip


====VirtualBox(Mac)====


Instructions for thin client
[[Virtualbox | Install and configuring instruction for mac]]


Download from above link and extract it. Then double click the specify appliance file.
[[Virtualbox_Install_Only | Install instruction for  mac]]
[[File:a.png]]


Start the appliance by clicking play button.
[[File:bb.png]]


====VMware fusion (Mac)====
Note that it is 30 days trial only. For the long-term free usage, we recommend VirtualBox above.


Now the appliance shows the IP addresses.  
http://www.vmware.com/products/fusion/
[[File:cc.png]]


Type the address shown on appliance to your web browser. Now you can use Specify thin client. User ID and password for demo database is shown on the appliance.
[[File:ff.png]]


==List of iDigBio Appliance==


Optionally, you can run thick client on web browser with the same address with different port number. You can use full-features of Specify 6.5. Password for VNC is shown on the appliance screen.
- [[Specify Appliance | Specify Appliance with VNC ]]
[[File:gg.png]]


- [[Specify_6_Appliance_Download_and_Installation | Specify Appliance with direct GUI]]


The other way to run Specify thick client is through VNCviewer.
- [[Specify Appliance virtualbox paleo | Specify Appliance with direct GUI with paleo demo database]]
You can download VNC viewer at below site.
http://www.realvnc.com/download/viewer/


- [[Arthropod Easy Capture Virtual Appliances]]


==Arthropod Easy Capture Appliance==


 
===Packaged software===
 
'''Arthropod Easy Capture'''
 
Packaged software
  - Apache server
  - Apache server
  - MySQL
  - MySQL
Line 80: Line 51:
  - Arthropod Easy Capture
  - Arthropod Easy Capture


===Download links===


Arthropod Easy Capture Appliance
====For VMware====


http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCaptureAppliance_vmware_v0.2.zip


For VMware
====For VirtualBox====


http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCapture.zip
http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCaptureAppliance_virtualbox_v0.2.zip


===Instructions===


For VirtualBox
Download from above link and run it through VMWare player. Then, IP address and port number is shown on VMWare player. Finally you enter the address on your browser address bar.


http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCapture-VirtualBox.zip
==Georeferencing Calculator Appliance==


 
===Packaged software===
Instructions
 
Download from above link and run it through VMWare player. Then, IP address and port number is shonw on VMWare player. Finally you enter the address on your browser address bar.
 
 
 
 
'''Georeferencing Calculator'''
 
 
Packaged software
  - Georeferencing Calculator
  - Georeferencing Calculator
  - Apache server
  - Apache server
  - Confuration Console
  - Configuration Console
 
- VNCServer
Donwload links
- GNOME
 
http://www.acis.ufl.edu/~xetron/Downloads/GeoreferencingCalculator.zip


Instructions
===Download links===


Download from above link and run it through VMWare player. Then, IP address and port number is shonw on VMWare player. Finally you enter the address on your browser address bar.  
====For VMware====
http://www.acis.ufl.edu/~xetron/Downloads/GeoreferencingCalculator_VMware_v0.2.zip


====For VirtualBox====
http://www.acis.ufl.edu/~xetron/Downloads/GeoreferencingCalculator_VirtualBox_v0.2.zip


===Instructions===


Download from above link and run it through VMWare player. Then, IP address and port number are shown on VMWare player. Finally you enter the address on your browser address bar.


'''Appliances under development'''
==Appliances under development==


  - Optical Character Recognition(OCR) appliance
  - Optical Character Recognition(OCR) appliance

Latest revision as of 16:47, 4 August 2014


Biology collection management software tools typically depends upon multiple software packages, such as databases, web servers, image manipulation libraries, among others. This complexity makes it difficult for end users to install and deploy these applications in use cases including training, technology evaluation, and management of small collections. To remove the burden on installing multiple software dependencies and facilitating the deployment of bio-collections software, the iDigBio IT team works with the community to package and make available pre-configured virtual appliances. Appliances leverage virtualization technologies to provide a user with a turnkey solution to run collections software (on their desktops, local servers, or cloud servers); users simply download the appliance and run it without the need to worry about installing and configuring additional software. An appliances runs web server inside so that you can connect to it through web browser.

Below is a list of iDigBio virtual appliances. These appliances are aimed at technology evaluation and training use cases, and gathering feedback from the community.

iDigBio welcomes proposals from the community to create virtual appliances. To submit a proposal, please visit https://www.idigbio.org/content/appliance-proposal

Required software for using a virtual appliance

To run a virtual appliance, you need one of VMware player (Windows and Linux), VMware fusion(Mac) or VirtualBox(Windows, Linux and Mac) . Below are the links for download. We call this program Hypervisor.

Download links

VMware workstation (Windows and Linux)

http://www.vmware.com/support/download-player


VirtualBox(Mac)

Install and configuring instruction for mac

Install instruction for mac


VMware fusion (Mac)

Note that it is 30 days trial only. For the long-term free usage, we recommend VirtualBox above.

http://www.vmware.com/products/fusion/


List of iDigBio Appliance

-  Specify Appliance with VNC 

-  Specify Appliance with direct GUI

-  Specify Appliance with direct GUI with paleo demo database

- Arthropod Easy Capture Virtual Appliances

Arthropod Easy Capture Appliance

Packaged software

- Apache server
- MySQL
- PHP
- Configuration Console
- Arthropod Easy Capture

Download links

For VMware

http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCaptureAppliance_vmware_v0.2.zip

For VirtualBox

http://www.acis.ufl.edu/~xetron/Downloads/ArthropodEasyCaptureAppliance_virtualbox_v0.2.zip

Instructions

Download from above link and run it through VMWare player. Then, IP address and port number is shown on VMWare player. Finally you enter the address on your browser address bar.

Georeferencing Calculator Appliance

Packaged software

- Georeferencing Calculator
- Apache server
- Configuration Console
- VNCServer
- GNOME

Download links

For VMware

http://www.acis.ufl.edu/~xetron/Downloads/GeoreferencingCalculator_VMware_v0.2.zip

For VirtualBox

http://www.acis.ufl.edu/~xetron/Downloads/GeoreferencingCalculator_VirtualBox_v0.2.zip

Instructions

Download from above link and run it through VMWare player. Then, IP address and port number are shown on VMWare player. Finally you enter the address on your browser address bar.

Appliances under development

- Optical Character Recognition(OCR) appliance
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