2017 ePANDDA Hackathon
Jump to navigation
Jump to search
Conference Wiki
Conference Abstracts
Conference Streaming and Recording
To the extent possible, the Conference sessions will be broadcast and recorded using Adobe Connect. Meeting hosts will monitor the chat to address questions/concerns. To connect, go to https://idigbio.adobeconnect.com/digitaldata, select “Enter as a Guest”, enter your first name and surname and click “Enter Room.” For more information, remote participants are strongly encouraged to visit the iDigBio Web Conferencing Wiki prior to connecting: https://www.idigbio.org/wiki/index.php/Web_Conferencing.
Special Request
The new Insect Systematics and Diversity (ISD) journal from the Entomological Society of America is interested in learning how to best accommodate new systematics, evolution, and biodiversity data types and figures (formats, file types, etc). The short survey at the following link highlights some of the most important questions from the journal as it moves forward. Any response that you can provide is extremely valuable to the ISD journal. Thank you.
Take the survey
Agenda: Monday, 5 June 2017
Wireless link: http://its.umich.edu/enterprise/wifi-networks/wifi
Twitter: #digibiodata
| Day One | ||||
|---|---|---|---|---|
| Breakfast (On your own) 7:00-8:00 a.m. | ||||
| Registration - The League Second Floor Concourse | ||||
| Keynote Session Session Recording The League Ballroom 8:00 - 10:15 a.m. Moderator: Larry Page | ||||
| Time | Title | Presenter(s) | ||
| 8:00-8:15c | Welcome and Introduction Opening Remarks: Inaugural Digital Data in Biodiversity Research Conference Introduction to iDigBio and ADBC |
Priscilla Tucker, Associate Chair for Museum Collections, University of Michigan Museum of Zoology Andrew D. Martin, Dean, College of Literature, Science, and the Arts, University of Michigan Larry Page, Director of iDigBio and Curator of Fishes, Florida Museum of Natural History, University of Florida | ||
| 8:15-8:45 | The Utility of Large-scale Phylogenetic Analyses for Understanding the Evolution of Biodiversity | Stephen Smith, University of Michigan | ||
| 8:45-9:15 | Expanding the Power of Natural History Knowledge: Frontiers in Research and Collections at the Smithsonian’s National Museum of Natural History |
Maureen Kearney, Smithsonian Institution | ||
| 9:15-9:45 | Linking Heterogeneous Data in Biodiversity Research | Pam Soltis, Florida Museum of Natural History, University of Florida | ||
| 9:45-10:00 | Using “Digital Specimens” to explore the behavioral phenotype | Mike Webster, Cornell Laboratory of Ornithology | ||
| 10:00-10:15 | Preserving Evidence of Biodiversity Patterns: GBIF and Persistent Biodiversity Data Management | Donald Hobern, GBIF Executive Secretary | ||
| 10:15-10:45 | Break - The League Second Floor Concourse | |||
| Concurrent Session I - The League Ballroom (10:45 a.m. - Noon) Session Recording Moderators: Susan Butts and Jocelyn Sessa | ||||
| 10:45-11:00 | 3D Surface Models in Paleontology and Archaeology | Dan Fisher, University of Michigan Museum of Paleontology | ||
| 11:00-11:15 | Paleobiology Database: A Community Based Data Service for Research, Education, and Museums | Mark Uhen, George Mason University | ||
| 11:15-11:30 | MorphoSource: A Virtual Museum and Digital Repository for 3D Specimen Data | Doug Boyer, Duke University | ||
| 11:30-11:45 | ePANDDA: enhancing Paleontological and Neontological Data Discovery API | Susan Butts, Yale University; Seth Kaufman, Whirligig Inc. | ||
| 11:45-12:00 | The Importance and Challenges of Database Integration: MorphoBank, MorphoSource, and the Paleobiology Database | Julie Winchester, Duke University | ||
| Concurrent Session II - The League Hussey Room (10:45 a.m. - Noon) Session Recording Moderator: Chris Dick | ||||
| 10:45-11:00 | Integrating Relevant Hydrologic Measures with Digitized Biodiversity Data to Investigate Climate Change Impacts on Freshwater Fishes | Jason Knoft, Saint Louis University | ||
| 11:00-11:15 | Biogeographic Filtering and the Assembly of Neotropical rainforests: Insights Using Ecological Traits Derived from Digital Biodiversity Data | Jordan Bemmels, University of Michigan | ||
| 11:15-11:30 | Supporting the Biological Collections Community with Specify Software for the Long Run | Jim Beach, University of Kansas Biodiversity Institute | ||
| 11:30-11:45 | Supporting Research Pipelines through the Creation of Stratigraphic and Taxonomic Concordances | Erica Clites, University of California Museum of Paleontology | ||
| 11:45-12:00 | Automating Tropical Pollen Counts Using Convolutional Neural Nets: From Image Acquisition to Identification | Derek Haselhorst, Program in Ecology, Evolution and Conservation Biology, University of Illinois | ||
| 12:00-1:30 | Lunch (On your own) - See page 3 of logistics document for restaurant suggestions | |||
| Afternoon Workshops - The League Second Floor (1:30-4:30) | ||||
| Workshop 2 - Hussey (2nd floor) Session Recording |
Workshop 1 - Ballroom (2nd floor) | Workshop 3 - Vandenberg (2nd floor) | ||
| Leaders: Bob Hanner, Stinger Guala, James Macklin Digital Data and the North American Nodes of the Global Biodiversity Information Facility Presentations National and Regional Coordination Roles within GBIF (Donald Hobern) Biodiversity Information Serving Our Nation (BISON): Connections and Cooperation (Stinger Guala) The Canadian Biodiversity Information Facility (CBIF) (James Macklin) Canadensys: revealing the biodiversity of Canada (Anne Bruneau) Overview of the Biodiversity Heritage Library Recent Activities (Martin Kalfatovic) The Catalogue of Life: Infrastructure for Science (Tom Orrell) Global Genome Biodiversity Network – Infrastructure for Genomic Research (Jon Coddington) iDigBio, National Coordinating Center for NSF's ADBC Program (Larry Page) Discussion Q&A |
Leaders: Pascal Title and Alison Davis Rabosky Automated species range map construction through aggregated global museum records |
Leaders: Dan Rabosky, Jonathan Mitchell Computational Macroevolution: Analysis and Visualization of Complex Evolutionary Dynamics on Phylogenies | ||
| Dinner (On your own) - 4:30 - 5:30 | ||||
| Reception and Collections Tours at the Collections Research Facility, Varsity Drive (6:00-9:00 p.m.) Busses departing Hill Auditorium 5:30 p.m.; loading for return at 8:30 p.m., with one return bus also going to Hampton Inn Ann Arbor South | ||||
Tuesday, 6 June 2017
Wireless link: http://its.umich.edu/enterprise/wifi-networks/wifi
| Day Two | ||||
|---|---|---|---|---|
| Breakfast (On your own) 7:00 - 8:00 a.m. | ||||
| Registration 7:00 - 8:00 a.m. | ||||
| Plenary Session - The League Ballroom (8:00 - 10:15 a.m.) Session Recording Moderator: Katelin D. Pearson | ||||
| Time | Title | Presenter(s) | ||
| 8:00-8:30 | Big Data, Museum Specimens, Access and Archiving - Lessons from #scanAllFish | Adam Summers, University of Washington | ||
| 8:30-9:00 | Video Data and Motion Analysis in Comparative Biomechanics Research | Beth Brainerd, Brown University | ||
| 9:00-9:30 | The PREDICTS Project: Projecting Responses of Ecological Diversity In Changing Terrestrial Systems |
Adriana De Palma, Natural History Museum, London | ||
| 9:30-10:00 | Field Collections to Digital Data: A Workflow for Fossils and the Use of Digital Data for Reconstructing Ancient Forests | Dori Contreras, University of California Museum of Paleontology | ||
| 10:00-10:15 | Natural History Data Pipelines: The Good, the Bad, and the Ugly | Andy Bentley, University of Kansas Biodiversity Institute | ||
| 10:15-10:45 | Break - The League Second Floor Concourse | |||
| Concurrent Session III - The League Ballroom (10:45 a.m. - Noon) Session Recording Moderator: Katelin D. Pearson | ||||
| 10:45-11:00 | Using Statistical Analysis to Calculate the Size of Biodiversity Literature | Alicia Esquivel, Chicago Botanic Garden | ||
| 11:00-11:15 | Illustrating Value Added in Databasing Historical Collections: Entered, Proofed, and Done (or Not!) | Tony Reznicek, University of Michigan Herbarium | ||
| 11:15-11:30 | The Encyclopedia of Life v3: Constructing a Linked Data Model | Jennifer Hammock, Smithsonian National Museum of Natural History | ||
| 11:30-11:45 | Encyclopedia of Life Version 3: New Tools for the Exploration of Biodiversity Knowledge | Katja Schulz, Smithsonian National Museum of Natural History | ||
| 11:45-12:00 | How do People see Biodiversity? Using a Digital Identification Key in a Citizen Science Program | Mathilde Delaunay, Muséum national d'Histoire naturelle, Paris, France | ||
| 12:00-12:15 | Taxonomic Data Quality in GBIF: A Case Study of Aquatic Macroinvertebrate Groups | Joan Damerow, Field Museum of Natural History | ||
| 12:15-12:30 | Hole-y Plant Databases! Understanding and Preventing Biases in Botanical Big Data | Katelin D. Pearson, Florida State University | ||
| Concurrent Session IV - The League Hussey Room (10:45 a.m. - Noon) Session Recording Moderator: Priscilla Tucker | ||||
| 10:45-11:00 | Reconstructing the Extinction Dynamics of Picea critchfieldii – The Application of Computer Vision to Fossil Pollen Analysis | Surangi Punyasena, University of Illinois | ||
| 11:00-11:15 | The Application of Optical Supperresolution Microscopy to the Study of Pollen Morphology | Michael Urban, University of Illinois - Urbana Champaign | ||
| 11:15-11:30 | Developing an Enterprise GIS to Support Collections Management, Teaching, and Research | Michael Kost, University of Michigan, Matthaei Botanical Gardens and Nichols Arboretum | ||
| 11:30-11:45 | How Digitizing and Tagging Helped Solve the Tully Monster Mystery | Paul Mayer, Field Museum of Natural History | ||
| 11:45-12:00 | Open Source Tools for Digitization Workflows | Mark Metz, USDA ARS SEL | ||
| 12:00-12:15 | iDigBio and the Digital Humanities | Maura Flannery, St. John's University, NY | ||
| 12:15-12:30 | Importance of Life Stage Capture in Dragonfly Specimen Digitization | Emily Sandall, Frost Entomological Museum, Penn State University | ||
| 12:30-1:45 | Lunch (On your own) - See page 3 of logistics document for restaurant suggestions | |||
| Poster Session - The League Vandenberg Room (1:45 - 3:30 p.m.) | ||||
| Widespread Sampling Bias in Herbarium Collections Identified from Comprehensively Sampled Mobilized Herbaria | Barnabas H. Daru Harvard University Herbaria | |||
| Digital Curation of Botanical Specimens from Isle Royale National Park | Helen DeMarsh Johns Hopkins University | |||
| Sharing Research Data: “I need to store and share data, and get recognition” | Danielle Descoteaux, Publisher, Ecology & Biodiversity Elsevier | |||
| Visually Representing a Biodiversity Literature Collection Using Metadata and Full Text Analysis | Alicia Esquivel Chicago Botanic Garden | |||
| Consider the Source: A Case Study Using GBIF Data for Research on Entocytherid Ostracods | Raquel A. Fagundo North Carolina Museum of Natural Sciences | |||
| Research and Management Applications of Online Collection Data: A Case Study of Prairie Fen Biodiversity | Rachel Hackett Central Michigan University | |||
| BioBeacon: An Online Field Guide to Digital Biodiversity Information Resources | Jarrett Blair, Bob Hanner, University of Guelph Biodiversity Institute of Ontario | |||
| Identifying, Cross-referencing, and Extracting Dark Data using GeoDeepDive | Erika Ito University of Wisconsin-Madison | |||
| Taxonomic Concept Mapping in Support of Floristic Studies | Thea Jaster Oregon State University | |||
| The Potential Within a Modern Flora | Thea Jaster Oregon State University | |||
| Imago: Building a Biocollections Repository for Digital Preservation and Scientific Reproducibility | Jennifer Laherty and Gary Motz Indiana University | |||
| Exploring the Untapped Potential of CT Scanning in the Quantitative Analysis of Brachiopod Long Loops | Natalia Lopez Carranza University of California, Davis | |||
| Kurator: A scientific workflow tool for data quality improvement of natural science collections data | James Macklin Agriculture and Agro-Food Canada | |||
| Digitizing Archival Data: Ecoinformatics in the Alcohol House | Kaylin Martin Carnegie Museum of Natural History | |||
| Biodiversity Literacy in Undergraduate Education (BLUE): Opportunities for Collaboration | Anna Monfils Central Michigan University | |||
| Global Biotic Interactions: A Case Study in Ecological Data Aggregation | Jorrit Poelen Global Biotic Interactions | |||
| Big Data Opportunities in Ecological and Biodiversity Informatics: A Functional Trait Perspective | Vaughn Shirey The Academy of Natural Sciences of Drexel University | |||
| The Value of Digital Morphology for Understanding Plant (Paleo) Biodiversity | Selena Smith University of Michigan | |||
| Automatic Generation of Herbarium Labels from Spreadsheet Data using LaTeX | R. Sean Thackurdeen New York Botanical Garden | |||
| Wildbook: Computer-assisted Identification of Crowd-sourced Wildlife Imagery | Jon Van Oast Wild Me | |||
| Patterns and Processes in the Evolution of Opisthoglyphous Fangs in Colubrid Snakes | Erin Westeen University of Michigan | |||
| Digitization of Strepsirrhine Primates from the Duke Lemur Center | Gabriel Yapuncich North Carolina State University | |||
| 3:30-4:00 | Break - The League Second Floor Concourse | |||
| Capstone Session Session Recording Moderator: Gil Nelson | ||||
| 4:00-4:30 | Prospects for the Use of Digitized Specimens in Studies of Plant Diversity and Evolution | Michael Donoghue, Patrick Sweeney, and Beth Spriggs, Yale University | ||
| 4:30-5:00 | A Vision for a National Cyberinfrastructure for Biodiversity Research and what NSF can do Enable it | Peter McCartney, National Science Foundation | ||
