Workflows Herbarium Digitization: Difference between revisions

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! colspan="2" style="background:#D58B28;width:150px;font-size:10pt" | Digitizing the Past and Present for the Future
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| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[Image: Sernec_and_IdigBio.PNG|center|350px|iDigBio Logo RGB.png]]<br />
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Workflows and Herbarium Digitization Workshop
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|[https://www.idigbio.org/wiki/images/c/c4/Agenda.pdf Workflows and Herbarium Digitization Workshop Agenda]
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|[https://www.idigbio.org/biblio?f%5bkeyword%5d=456 Workflows and Herbarium Digitization Workshop Biblio Entries]
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|[https://www.idigbio.org/content/bringing-herbarium-workflows-date Workflows and Herbarium Digitization Workshop Report]
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==[[Digitization Resources|Digitization Resources Wiki Home]]==
==[[Digitization Resources|Digitization Resources Wiki Home]]==
<br />
<br />
==Agenda and Logistics==
==Agenda and Logistics==
<br />
*[[Media:Agenda.pdf|Workshop Agenda]]
*[[Media:Logistics.pdf|Logistics document]]
*[[Media:PotentialGroupings.docx.pdf|Potential working groups]]
*[https://www.google.com/maps/dir/1330+St+Augustine+Rd,+Valdosta,+GA+31601/30.844763,+-83.285580/@30.8370223,-83.3066966,15z/data=!4m14!4m13!1m5!1m1!1s0x88ee669903027b99:0x57d49fff2ae22ac5!2m2!1d-83.3288603!2d30.842417!1m5!1m1!1s0x0:0x0!2m2!1d-83.28558!2d30.844763!3e0 Google map from hotel to workshop venue]
*[[Media:VSU_Campus_Map.pdf|VSU campus map showing workshop venue]]
*[https://docs.google.com/document/d/1zVUo-fP3hVSHV-iMmHuKOdpCIFLGNIhH8MGBlEYTCY4/edit?usp=sharing Potential considerations]
*[https://docs.google.com/document/d/1K7gal_cBwTgbY8tIkPiSyiiNI-BHexY1EMiVXc_zG-o/edit?usp=sharing Notes from afternoon wrap up, 27 Jan]
*[https://docs.google.com/document/d/1ug3XX8uDgEDFU04F3BuCXJIKO0Z4Ylz7R0wJRgswA7Q/edit?usp=sharing Potential groupings]
*[https://docs.google.com/document/d/1mDb7JkcduWBRAEoq5xduqiFHhxK2oqn6CfTVobZatXo/edit?usp=sharing Priorities]
*[https://docs.google.com/document/d/1CQG5cmKoUouF1kkIk8csJD3uSNHwDm7BTIVQeSTCGdA/edit?usp=sharing Start of paper]
*[https://docs.google.com/document/d/101xiTFuhMeGO0VI38zIeAj21qgvJEFXvC6YdaIlCLxs/edit?usp=sharing Outline]
*[https://docs.google.com/document/d/1V3N66MSsxIjVjLGWu7rmLuj4gEfJvZ9oiuxAwVU-Y4E/edit?usp=sharing Citations, references, links]
**[[Media:How to clean a scanner.pdf|How to clean a flatbed scanner]]
 
==iDigBio Workflows==
*[https://www.idigbio.org/content/workflow-modules-and-task-lists Workflow Modules and Task Lists]
*[https://www.idigbio.org/wiki/index.php/Collections_Digitization_Workflows Collections_Digitization_Workflows]
 
==Workflow Diagrams==
*[[Media:FN2D2I_NewSpecimen.pdf|FN2D2I]]
*[[Media:O2D2EI_ExistingSpecimen_OCR.pdf|O2D2EI]]
*[[Media:O2I2D(1)_ExistingSpecimen_OCR.pdf|O2I2D(1)]]
*[[Media:O2I2D(2)_ExistingSpecimen_OCR.pdf|O2I2D(2)]]
*[[Media:Workflow_diagram.pdf|Another type of workflow diagram]]
 
==Contributed Workflows==
==Contributed Workflows==
<br />
*iDigBio Workflows
**[https://www.idigbio.org/content/workflow-modules-and-task-lists iDigBio Flat Sheets and Packets workflows (plus others)]
***[https://docs.google.com/document/d/1Of_gbWsxYnk7aRhxkvBazal0zcGRW4XJdPYbgWBYR5E/edit?usp=sharing Pre-digitization Curation]
***[https://docs.google.com/document/d/1DIh08DnwAKtfRVz0ZFWgVvX0XDCBARDvsEGr-b3Z23o/edit?usp=sharing Imaging Station Setup-Camera]
***[https://docs.google.com/document/d/1-MebJoTDlTcD9QoR2VbUFzzaXjBzumvWT8YIy8ozMpc/edit?usp=sharing Imaging Station Setup-Scanner]
***[https://docs.google.com/document/d/1Njg7HPA39bd3vwbfN6b0X-A3ZQepf__pGiVXjODCwFw/edit?usp=sharing Imaging]
***[https://docs.google.com/document/d/1MyrlS3Rw6-DCvfemAJ5dMqj7poGFcNZ2uH7fagDDHiE/edit?usp=sharing Image Processing]
***[https://docs.google.com/document/d/1d8_PCG2Wtr28eH8C2dswS9HBfOuqju2Yiu8_Ut_7lts/edit?usp=sharing Data Capture]
*Working Workflow Templates
**[https://docs.google.com/document/d/1Sb1mMxr8IuBmiVb2NOyFOs2cyOQT7seCuFM-dajfdH4/edit?usp=sharing Selecting an Imaging Station]
**[https://docs.google.com/document/d/1yOld19I7TvJ-5_fF1YNz0WS5Th-lLBPNDhNVNAZRUes/edit?usp=sharing Proactive Digitization]
**[https://docs.google.com/document/d/1348RqvgAOd6P90IOvbbjsIT1xEzHFDg3iazV0fAYIW0/edit?usp=sharing Imaging Station Set-Up Conveyer]
**[https://docs.google.com/document/d/1LrtTaZkmYsPdqfswXBXfyBy5ivSqbHSe84FXmp8VLHM/edit?usp=sharing Imaging Station Set-up Lightbox]
**[https://docs.google.com/document/d/1CWbXnH6thfvwMtDrADVWkpme2G4WQUBmBwDy7VASdy8/edit?usp=sharing Organizing and Implementing a Public Participation Imaging Blitz]
**[https://docs.google.com/document/d/1YUa3-oVlTOnv5kzAPG9hTaoX6jTh09CpIMkeu-e2ac8/edit?usp=sharing Organizing and Implementing a Public Participation Transcription Blitz]
**[https://docs.google.com/document/d/1IGGL3ykJue1L06uW3PfUXtWTBoDyVjMplegYrIptqVU/edit?usp=sharing Georeferencing]
**[https://docs.google.com/document/d/1bZOQEaJvmx1S3lSXhuOsbwjPbONpqTWnEeBV0dUDf38/edit?usp=sharing Aggregating Data to iDigBio]
**[https://docs.google.com/document/d/1SPioZ5eLCGbyIpadkP-SUruFemjtCXuPSM15v-yntXI/edit?usp=sharing Responding to Post-digitization Data Requests]
**[https://docs.google.com/document/d/1zOobjPlySoXN4E91BprN8pzf8BH2X32pTP5dFhRQz_M/edit?usp=sharing Post-digitization task list]
**[https://docs.google.com/document/d/1OIgtMSMRt2YG8ii08I7bhBtrbP2WIzWolfvZBDZbkvs/edit?usp=sharing Image archiving]
**[https://docs.google.com/document/d/1pkzWc4t3wbBhqXRnwDgEy9yxqT9rbmkOyr2iqqvlF4c/edit?usp=sharing Selecting a database]
*Lichens and Bryophytes
**[[Media:LBCC_Workflow.pdf|LBCCWorkflows (Julianne Smith)]]
**[[Media:WIS_Digitization_WF.pdf|Digitization workflow (Julianne Smith)]]
*Valdosta State (Richard Carter)
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Data%20entry%20rules.pdf VSC data entry rules]
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20General%20Instructions%20on%20Handling%20Herbarium%20Specimens.pdf General instructions for handling herbarium specimens]
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Herbarium%20Housekeeping.pdf VSC herbarium housekeeping]
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Imaging%20Station%20Setup.pdf VSC imaging station setup]
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Imaging%20with%20FNIntercept.pdf VSC imaging with FNIntercept]
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Predigitization%20curation.pdf VSC predigitization curation]
**[[Media:VSC_Georeferencing.pdf|VSC Georeferencing protocol]]
 
==Discussion Notes==
*[https://docs.google.com/document/d/1zVUo-fP3hVSHV-iMmHuKOdpCIFLGNIhH8MGBlEYTCY4/edit?usp=sharing Potential considerations]
*[https://docs.google.com/document/d/1K7gal_cBwTgbY8tIkPiSyiiNI-BHexY1EMiVXc_zG-o/edit?usp=sharing Notes from afternoon wrap up, 27 Jan]
 
==Workflows from Other Sources==
*[[Media:barbsIdigBioPowerPt.pdf|Herbarium Pacificum specimen flow (Barbara Kennedy)]]
*[[Media:Barcoding ppt.pdf|Herbarium Pacificum Barcoding Procedures & Information (Varnelle Magoon)]]
*[http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/ http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/]
*[http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects]
*[http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project]
*[http://www.bardecode.com/en1/app/bardecodefiler/ BarDecodeFiler: software to rename images to barcode value (used by NYBG)]
*[https://github.com/NYBG-Herbarium PowerShell Script to rename images based on renamed JPEG and BardecodeFiler output (NYBG)]
*[https://docs.google.com/document/d/15QJZzhehpVMSmC7OLYVWjc_1kUANJGKv4tgNJe01EsA/edit?usp=sharing FSU georef protocol]
*[https://docs.google.com/document/d/1GWUokK8ifZtXTBz4W0oGp3ofTHv6syKhmpCGwHntQ1w/edit?usp=sharing FSU georef protocol 2]
 
==Presentations==
==Presentations==
*[[Media:WorkshopOverview.pdf|Workshop Overview (Gil Nelson)]]
*[[Media:iDigBio Soltis Valdosta.pdf|Using digital images and data in botanical research (Pam Soltis)]]
*[[Media:Zack's_talks_Jan2015.pdf|Talks by Zack Murrell]]
*[[Media:FlatSheetsPackets.pdf|Flat Sheets and Packets Workflow Working Group (Gil Nelson)]]
*[[Media:Watson_NYBG_Digitization_Workflows.pdf|NYBG workflows (Kim Watson)]]
*[[Media:Legler_PNW.pdf|Pacific NW herbarium consortium workflows]]
*[[Media:CCH_workflows_Nazaire.pdf|Consortium of California Herbaria workflows (Mare Nazaire)]]
*[[Media:Wallace_MS.pdf|Mississippi grandiFLORA workflows (Lisa Wallace)]]
*[[Media:Mast_Deep_South_Valdosta_15.pdf|Deep South Plant Specimen Imaging Project (Austin Mast)]]
*[[Media:Sweeney_NEVP_2015.pdf|New England vascular plants Tcn workflows (Patrick Sweeney)]]
*[[Media:Neefus-Valdosta_Meeting_-_Macroalgal_Project.pdf|Macroalgae TCN workflows (Chris Neefus)]]
*[[Media:Rabeler-GLIS.pdf|Great Lakes Consortium workflows (Rich Rabeler)]]
*[[Media:WIS_Digitization_WF.pdf|Digitization workflow (Julianne Smith)]]
*[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/Proactive%20digitization.pdf Valdosta State workflows (Richard Carter)]
*[[Media:Mccormick-UNC-Lessons_Learned.pdf|Workflows at University of North Carolina (Carol Ann McCormick)]]
*[[Media:Sasak-CyberFlora_Louisiana_2015.pdf|Louisiana Cyberflora workflows (Tom Sasak)]]
*[[Media:Symbiota_2014-01-27.pdf|Symbiota workflows (Ed Gilbert)]]
*[[Media:Marchant-Valdosta.pdf|Georeferencing workflows (Blaine Marchant)]]
*[[Media:Mast_Crowd_Valdosta_15.pdf|Crowd-sourcing, volunteers, blitzes (Austin Mast)]]
*[[Media:Gilespie-iDigBio.pdf|Maximizing and sources of student labor (Emily Gillespie)]]
*[[Media:Skeletal records accompanying images.pdf|Skeletal Records Accompanying Images: Efficiency VS Later Utility(Rich Rabeler)]]
==Recordings==
*[http://idigbio.adobeconnect.com/p41qn8flwd2/ 8:30am-10:15am]
*[http://idigbio.adobeconnect.com/p40od21qv2k/ 10:30am-12:30pm]

Latest revision as of 08:39, 28 August 2015

Digitizing the Past and Present for the Future
iDigBio Logo RGB.png

Quick Links for Workflows and Herbarium Digitization Workshop
Workflows and Herbarium Digitization Workshop Agenda
Workflows and Herbarium Digitization Workshop Biblio Entries
Workflows and Herbarium Digitization Workshop Report

Digitization Resources Wiki Home


Agenda and Logistics

iDigBio Workflows

Workflow Diagrams

Contributed Workflows

Discussion Notes

Workflows from Other Sources

Presentations

Recordings

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