Workflows Herbarium Digitization: Difference between revisions
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! colspan="2" style="background:#D58B28;width:150px;font-size:10pt" | Digitizing the Past and Present for the Future | |||
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| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[Image: Sernec_and_IdigBio.PNG|center|350px|iDigBio Logo RGB.png]]<br /> | |||
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Workflows and Herbarium Digitization Workshop | |||
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|[https://www.idigbio.org/wiki/images/c/c4/Agenda.pdf Workflows and Herbarium Digitization Workshop Agenda] | |||
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|[https://www.idigbio.org/biblio?f%5bkeyword%5d=456 Workflows and Herbarium Digitization Workshop Biblio Entries] | |||
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|[https://www.idigbio.org/content/bringing-herbarium-workflows-date Workflows and Herbarium Digitization Workshop Report] | |||
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==[[Digitization Resources|Digitization Resources Wiki Home]]== | ==[[Digitization Resources|Digitization Resources Wiki Home]]== | ||
<br /> | <br /> | ||
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*[https://www.google.com/maps/dir/1330+St+Augustine+Rd,+Valdosta,+GA+31601/30.844763,+-83.285580/@30.8370223,-83.3066966,15z/data=!4m14!4m13!1m5!1m1!1s0x88ee669903027b99:0x57d49fff2ae22ac5!2m2!1d-83.3288603!2d30.842417!1m5!1m1!1s0x0:0x0!2m2!1d-83.28558!2d30.844763!3e0 Google map from hotel to workshop venue] | *[https://www.google.com/maps/dir/1330+St+Augustine+Rd,+Valdosta,+GA+31601/30.844763,+-83.285580/@30.8370223,-83.3066966,15z/data=!4m14!4m13!1m5!1m1!1s0x88ee669903027b99:0x57d49fff2ae22ac5!2m2!1d-83.3288603!2d30.842417!1m5!1m1!1s0x0:0x0!2m2!1d-83.28558!2d30.844763!3e0 Google map from hotel to workshop venue] | ||
*[[Media:VSU_Campus_Map.pdf|VSU campus map showing workshop venue]] | *[[Media:VSU_Campus_Map.pdf|VSU campus map showing workshop venue]] | ||
*[https://docs.google.com/document/d/1zVUo-fP3hVSHV-iMmHuKOdpCIFLGNIhH8MGBlEYTCY4/edit?usp=sharing Potential considerations] | |||
*[https://docs.google.com/document/d/1K7gal_cBwTgbY8tIkPiSyiiNI-BHexY1EMiVXc_zG-o/edit?usp=sharing Notes from afternoon wrap up, 27 Jan] | |||
*[https://docs.google.com/document/d/1ug3XX8uDgEDFU04F3BuCXJIKO0Z4Ylz7R0wJRgswA7Q/edit?usp=sharing Potential groupings] | |||
*[https://docs.google.com/document/d/1mDb7JkcduWBRAEoq5xduqiFHhxK2oqn6CfTVobZatXo/edit?usp=sharing Priorities] | |||
*[https://docs.google.com/document/d/1CQG5cmKoUouF1kkIk8csJD3uSNHwDm7BTIVQeSTCGdA/edit?usp=sharing Start of paper] | |||
*[https://docs.google.com/document/d/101xiTFuhMeGO0VI38zIeAj21qgvJEFXvC6YdaIlCLxs/edit?usp=sharing Outline] | |||
*[https://docs.google.com/document/d/1V3N66MSsxIjVjLGWu7rmLuj4gEfJvZ9oiuxAwVU-Y4E/edit?usp=sharing Citations, references, links] | |||
**[[Media:How to clean a scanner.pdf|How to clean a flatbed scanner]] | |||
==iDigBio Workflows== | ==iDigBio Workflows== | ||
*[https://www.idigbio.org/content/workflow-modules-and-task-lists Workflow Modules and Task Lists] | *[https://www.idigbio.org/content/workflow-modules-and-task-lists Workflow Modules and Task Lists] | ||
*[https://www.idigbio.org/wiki/index.php/Collections_Digitization_Workflows Collections_Digitization_Workflows] | *[https://www.idigbio.org/wiki/index.php/Collections_Digitization_Workflows Collections_Digitization_Workflows] | ||
==Workflow Diagrams== | |||
*[[Media:FN2D2I_NewSpecimen.pdf|FN2D2I]] | |||
*[[Media:O2D2EI_ExistingSpecimen_OCR.pdf|O2D2EI]] | |||
*[[Media:O2I2D(1)_ExistingSpecimen_OCR.pdf|O2I2D(1)]] | |||
*[[Media:O2I2D(2)_ExistingSpecimen_OCR.pdf|O2I2D(2)]] | |||
*[[Media:Workflow_diagram.pdf|Another type of workflow diagram]] | |||
==Contributed Workflows== | ==Contributed Workflows== | ||
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***[https://docs.google.com/document/d/1MyrlS3Rw6-DCvfemAJ5dMqj7poGFcNZ2uH7fagDDHiE/edit?usp=sharing Image Processing] | ***[https://docs.google.com/document/d/1MyrlS3Rw6-DCvfemAJ5dMqj7poGFcNZ2uH7fagDDHiE/edit?usp=sharing Image Processing] | ||
***[https://docs.google.com/document/d/1d8_PCG2Wtr28eH8C2dswS9HBfOuqju2Yiu8_Ut_7lts/edit?usp=sharing Data Capture] | ***[https://docs.google.com/document/d/1d8_PCG2Wtr28eH8C2dswS9HBfOuqju2Yiu8_Ut_7lts/edit?usp=sharing Data Capture] | ||
* | *Working Workflow Templates | ||
**[https://docs.google.com/document/d/1Sb1mMxr8IuBmiVb2NOyFOs2cyOQT7seCuFM-dajfdH4/edit?usp=sharing Selecting an Imaging Station] | **[https://docs.google.com/document/d/1Sb1mMxr8IuBmiVb2NOyFOs2cyOQT7seCuFM-dajfdH4/edit?usp=sharing Selecting an Imaging Station] | ||
**[https://docs.google.com/document/d/1yOld19I7TvJ-5_fF1YNz0WS5Th-lLBPNDhNVNAZRUes/edit?usp=sharing Proactive Digitization] | **[https://docs.google.com/document/d/1yOld19I7TvJ-5_fF1YNz0WS5Th-lLBPNDhNVNAZRUes/edit?usp=sharing Proactive Digitization] | ||
**[https://docs.google.com/document/d/1348RqvgAOd6P90IOvbbjsIT1xEzHFDg3iazV0fAYIW0/edit?usp=sharing Imaging Station Set-Up Conveyer] | **[https://docs.google.com/document/d/1348RqvgAOd6P90IOvbbjsIT1xEzHFDg3iazV0fAYIW0/edit?usp=sharing Imaging Station Set-Up Conveyer] | ||
**[https://docs.google.com/document/d/1LrtTaZkmYsPdqfswXBXfyBy5ivSqbHSe84FXmp8VLHM/edit?usp=sharing Imaging Station Set-up Lightbox] | **[https://docs.google.com/document/d/1LrtTaZkmYsPdqfswXBXfyBy5ivSqbHSe84FXmp8VLHM/edit?usp=sharing Imaging Station Set-up Lightbox] | ||
**[https://docs.google.com/document/d/1CWbXnH6thfvwMtDrADVWkpme2G4WQUBmBwDy7VASdy8/edit?usp=sharing Organizing and Implementing a | **[https://docs.google.com/document/d/1CWbXnH6thfvwMtDrADVWkpme2G4WQUBmBwDy7VASdy8/edit?usp=sharing Organizing and Implementing a Public Participation Imaging Blitz] | ||
**[https://docs.google.com/document/d/1YUa3-oVlTOnv5kzAPG9hTaoX6jTh09CpIMkeu-e2ac8/edit?usp=sharing Organizing and Implementing a | **[https://docs.google.com/document/d/1YUa3-oVlTOnv5kzAPG9hTaoX6jTh09CpIMkeu-e2ac8/edit?usp=sharing Organizing and Implementing a Public Participation Transcription Blitz] | ||
**[https://docs.google.com/document/d/1IGGL3ykJue1L06uW3PfUXtWTBoDyVjMplegYrIptqVU/edit?usp=sharing Georeferencing] | |||
**[https://docs.google.com/document/d/1bZOQEaJvmx1S3lSXhuOsbwjPbONpqTWnEeBV0dUDf38/edit?usp=sharing Aggregating Data to iDigBio] | |||
**[https://docs.google.com/document/d/1SPioZ5eLCGbyIpadkP-SUruFemjtCXuPSM15v-yntXI/edit?usp=sharing Responding to Post-digitization Data Requests] | |||
**[https://docs.google.com/document/d/1zOobjPlySoXN4E91BprN8pzf8BH2X32pTP5dFhRQz_M/edit?usp=sharing Post-digitization task list] | |||
**[https://docs.google.com/document/d/1OIgtMSMRt2YG8ii08I7bhBtrbP2WIzWolfvZBDZbkvs/edit?usp=sharing Image archiving] | |||
**[https://docs.google.com/document/d/1pkzWc4t3wbBhqXRnwDgEy9yxqT9rbmkOyr2iqqvlF4c/edit?usp=sharing Selecting a database] | |||
*Lichens and Bryophytes | *Lichens and Bryophytes | ||
**[[Media:LBCC_Workflow.pdf|LBCCWorkflows (Julianne Smith)]] | **[[Media:LBCC_Workflow.pdf|LBCCWorkflows (Julianne Smith)]] | ||
**[[Media:WIS_Digitization_WF.pdf|Digitization workflow (Julianne Smith)]] | **[[Media:WIS_Digitization_WF.pdf|Digitization workflow (Julianne Smith)]] | ||
*Valdosta State (Richard Carter) | *Valdosta State (Richard Carter) | ||
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Data%20entry%20rules.pdf VSC data entry rules] | **[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20Data%20entry%20rules.pdf VSC data entry rules] | ||
**[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20General%20Instructions%20on%20Handling%20Herbarium%20Specimens.pdf General instructions for handling herbarium specimens] | **[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/VSC%20General%20Instructions%20on%20Handling%20Herbarium%20Specimens.pdf General instructions for handling herbarium specimens] | ||
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**[[Media:VSC_Georeferencing.pdf|VSC Georeferencing protocol]] | **[[Media:VSC_Georeferencing.pdf|VSC Georeferencing protocol]] | ||
== | ==Discussion Notes== | ||
*[https://docs.google.com/document/d/1zVUo-fP3hVSHV-iMmHuKOdpCIFLGNIhH8MGBlEYTCY4/edit?usp=sharing Potential considerations] | |||
*[https://docs.google.com/document/d/1K7gal_cBwTgbY8tIkPiSyiiNI-BHexY1EMiVXc_zG-o/edit?usp=sharing Notes from afternoon wrap up, 27 Jan] | |||
==Workflows from Other Sources== | ==Workflows from Other Sources== | ||
*[[Media:barbsIdigBioPowerPt.pdf|Herbarium Pacificum specimen flow(Barbara Kennedy)]] | *[[Media:barbsIdigBioPowerPt.pdf|Herbarium Pacificum specimen flow (Barbara Kennedy)]] | ||
*[[Media:Barcoding ppt.pdf|Herbarium Pacificum Barcoding Procedures & Information (Varnelle Magoon)]] | *[[Media:Barcoding ppt.pdf|Herbarium Pacificum Barcoding Procedures & Information (Varnelle Magoon)]] | ||
*[http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/ http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/] | *[http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/ http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/] | ||
*[http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects] | *[http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects] | ||
*[http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project] | *[http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project] | ||
*[http://www.bardecode.com/en1/app/bardecodefiler/ BarDecodeFiler: software to rename images to barcode value (used by NYBG)] | |||
*[https://github.com/NYBG-Herbarium PowerShell Script to rename images based on renamed JPEG and BardecodeFiler output (NYBG)] | |||
*[https://docs.google.com/document/d/15QJZzhehpVMSmC7OLYVWjc_1kUANJGKv4tgNJe01EsA/edit?usp=sharing FSU georef protocol] | |||
*[https://docs.google.com/document/d/1GWUokK8ifZtXTBz4W0oGp3ofTHv6syKhmpCGwHntQ1w/edit?usp=sharing FSU georef protocol 2] | |||
==Presentations== | ==Presentations== | ||
*[[Media:WorkshopOverview.pdf|Workshop Overview (Gil Nelson)]] | *[[Media:WorkshopOverview.pdf|Workshop Overview (Gil Nelson)]] | ||
*[[Media:iDigBio Soltis Valdosta.pdf|Using digital images and data in botanical research (Pam Soltis)]] | |||
*[[Media:Zack's_talks_Jan2015.pdf|Talks by Zack Murrell]] | |||
*[[Media:FlatSheetsPackets.pdf|Flat Sheets and Packets Workflow Working Group (Gil Nelson)]] | *[[Media:FlatSheetsPackets.pdf|Flat Sheets and Packets Workflow Working Group (Gil Nelson)]] | ||
*[[Media:Watson_NYBG_Digitization_Workflows.pdf|NYBG workflows (Kim Watson)]] | |||
*[[Media:Legler_PNW.pdf|Pacific NW herbarium consortium workflows]] | |||
*[[Media:CCH_workflows_Nazaire.pdf|Consortium of California Herbaria workflows (Mare Nazaire)]] | |||
*[[Media:Wallace_MS.pdf|Mississippi grandiFLORA workflows (Lisa Wallace)]] | |||
*[[Media:Mast_Deep_South_Valdosta_15.pdf|Deep South Plant Specimen Imaging Project (Austin Mast)]] | |||
*[[Media:Sweeney_NEVP_2015.pdf|New England vascular plants Tcn workflows (Patrick Sweeney)]] | |||
*[[Media:Neefus-Valdosta_Meeting_-_Macroalgal_Project.pdf|Macroalgae TCN workflows (Chris Neefus)]] | |||
*[[Media:Rabeler-GLIS.pdf|Great Lakes Consortium workflows (Rich Rabeler)]] | |||
*[[Media:WIS_Digitization_WF.pdf|Digitization workflow (Julianne Smith)]] | |||
*[http://idigbio.org/sites/default/files/workshop-presentations/SERNEC_Workflows/Proactive%20digitization.pdf Valdosta State workflows (Richard Carter)] | |||
*[[Media:Mccormick-UNC-Lessons_Learned.pdf|Workflows at University of North Carolina (Carol Ann McCormick)]] | |||
*[[Media:Sasak-CyberFlora_Louisiana_2015.pdf|Louisiana Cyberflora workflows (Tom Sasak)]] | |||
*[[Media:Symbiota_2014-01-27.pdf|Symbiota workflows (Ed Gilbert)]] | |||
*[[Media:Marchant-Valdosta.pdf|Georeferencing workflows (Blaine Marchant)]] | |||
*[[Media:Mast_Crowd_Valdosta_15.pdf|Crowd-sourcing, volunteers, blitzes (Austin Mast)]] | |||
*[[Media:Gilespie-iDigBio.pdf|Maximizing and sources of student labor (Emily Gillespie)]] | |||
*[[Media:Skeletal records accompanying images.pdf|Skeletal Records Accompanying Images: Efficiency VS Later Utility(Rich Rabeler)]] | |||
==Recordings== | |||
*[http://idigbio.adobeconnect.com/p41qn8flwd2/ 8:30am-10:15am] | |||
*[http://idigbio.adobeconnect.com/p40od21qv2k/ 10:30am-12:30pm] | |||
Latest revision as of 07:39, 28 August 2015
| Digitizing the Past and Present for the Future | |
|---|---|
 | |
| Quick Links for Workflows and Herbarium Digitization Workshop | |
| Workflows and Herbarium Digitization Workshop Agenda | |
| Workflows and Herbarium Digitization Workshop Biblio Entries | |
| Workflows and Herbarium Digitization Workshop Report | |
Digitization Resources Wiki Home
Agenda and Logistics
- Workshop Agenda
- Logistics document
- Potential working groups
- Google map from hotel to workshop venue
- VSU campus map showing workshop venue
- Potential considerations
- Notes from afternoon wrap up, 27 Jan
- Potential groupings
- Priorities
- Start of paper
- Outline
- Citations, references, links
iDigBio Workflows
Workflow Diagrams
Contributed Workflows
- iDigBio Workflows
- Working Workflow Templates
- Selecting an Imaging Station
- Proactive Digitization
- Imaging Station Set-Up Conveyer
- Imaging Station Set-up Lightbox
- Organizing and Implementing a Public Participation Imaging Blitz
- Organizing and Implementing a Public Participation Transcription Blitz
- Georeferencing
- Aggregating Data to iDigBio
- Responding to Post-digitization Data Requests
- Post-digitization task list
- Image archiving
- Selecting a database
- Lichens and Bryophytes
- Valdosta State (Richard Carter)
Discussion Notes
Workflows from Other Sources
- Herbarium Pacificum specimen flow (Barbara Kennedy)
- Herbarium Pacificum Barcoding Procedures & Information (Varnelle Magoon)
- http://www.jiscdigitalmedia.ac.uk/guide/generic-image-digitisation-workflow/
- http://www.jiscdigitalmedia.ac.uk/guide/quality-assurance-and-digitisation-projects
- http://www.jiscdigitalmedia.ac.uk/guide/budgeting-for-a-digitisation-project
- BarDecodeFiler: software to rename images to barcode value (used by NYBG)
- PowerShell Script to rename images based on renamed JPEG and BardecodeFiler output (NYBG)
- FSU georef protocol
- FSU georef protocol 2
Presentations
- Workshop Overview (Gil Nelson)
- Using digital images and data in botanical research (Pam Soltis)
- Talks by Zack Murrell
- Flat Sheets and Packets Workflow Working Group (Gil Nelson)
- NYBG workflows (Kim Watson)
- Pacific NW herbarium consortium workflows
- Consortium of California Herbaria workflows (Mare Nazaire)
- Mississippi grandiFLORA workflows (Lisa Wallace)
- Deep South Plant Specimen Imaging Project (Austin Mast)
- New England vascular plants Tcn workflows (Patrick Sweeney)
- Macroalgae TCN workflows (Chris Neefus)
- Great Lakes Consortium workflows (Rich Rabeler)
- Digitization workflow (Julianne Smith)
- Valdosta State workflows (Richard Carter)
- Workflows at University of North Carolina (Carol Ann McCormick)
- Louisiana Cyberflora workflows (Tom Sasak)
- Symbiota workflows (Ed Gilbert)
- Georeferencing workflows (Blaine Marchant)
- Crowd-sourcing, volunteers, blitzes (Austin Mast)
- Maximizing and sources of student labor (Emily Gillespie)
- Skeletal Records Accompanying Images: Efficiency VS Later Utility(Rich Rabeler)